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Updated: Jun 27, 2026

Production and Testing of Antimicrobial Peptides and Their Mimics
Published on: April 10, 2026
3‑Methylthiopropionic Acid Kills Carbapenem-Resistant Klebsiella pneumoniae by Disrupting Membrane Integrity and
Lirui Ge1, Liang Zhao1, Saiwa Liu1
1State Key Laboratory of Veterinary Public Health and Safety, College of Veterinary Medicine, China Agricultural University, Beijing 100193, China.
Abstract:
The rapid dissemination of New Delhi metallo-β-lactamase (NDM) genes, such as bla NDM‑1 and bla NDM‑5, has rendered carbapenems ineffective against Klebsiella pneumoniae, posing a severe public health threat. Here, we employ comparative metabolomics to reveal that NDM-mediated resistance is underpinned by profound metabolic reprogramming. From this altered metabolic landscape, we identify 3-methylthiopropionic acid (MTPA) as a potent endogenous metabolite capable of directly killing NDM-producing strains. MTPA exhibits rapid bactericidal activity in vitro and significantly improves survival in murine infection models. Mechanistically, MTPA disrupts membrane integrity, dissipates proton motive force, depletes intracellular ATP, and induces ROS accumulation via respiratory chain complex I inhibition. Integrated transcriptomics and metabolomics revealed a catastrophic collapse of central carbon metabolism, CoA biosynthesis, and redox homeostasis. This work establishes a chemical strategy to combat carbapenem resistance by targeting pathogen metabolic reprogramming.
Insights
New Delhi metallo-β-lactamase (NDM) resistance in Klebsiella pneumoniae is linked to metabolic changes. Researchers identified 3-methylthiopropionic acid (MTPA) as a metabolite that kills NDM-producing bacteria, offering a new strategy against carbapenem resistance.
Area of Science:
- Microbiology
- Metabolomics
- Drug Discovery
Background:
- The spread of New Delhi metallo-β-lactamase (NDM) genes confers resistance to carbapenems in Klebsiella pneumoniae.
- This resistance poses a significant global health challenge, necessitating novel therapeutic approaches.
Purpose of the Study:
- To investigate the metabolic underpinnings of NDM-mediated carbapenem resistance in Klebsiella pneumoniae.
- To identify potential therapeutic targets or agents derived from metabolic reprogramming.
Main Methods:
- Comparative metabolomics was used to analyze metabolic differences in NDM-producing Klebsiella pneumoniae.
- In vitro bactericidal assays and murine infection models were employed to evaluate the efficacy of identified metabolites.
- Integrated transcriptomics and metabolomics were performed to elucidate the mechanism of action.
Main Results:
- NDM-mediated resistance is associated with significant metabolic reprogramming in Klebsiella pneumoniae.
- 3-methylthiopropionic acid (MTPA), an endogenous metabolite, demonstrated potent bactericidal activity against NDM-producing strains.
- MTPA disrupts bacterial membrane integrity, energy production (ATP depletion), and induces reactive oxygen species (ROS) via Complex I inhibition.
- Treatment with MTPA significantly improved survival rates in a murine model of Klebsiella pneumoniae infection.
Conclusions:
- Metabolic reprogramming is a key factor in carbapenem resistance mediated by NDM genes.
- MTPA represents a promising endogenous agent for combating NDM-producing Klebsiella pneumoniae infections.
- Targeting pathogen metabolic pathways offers a viable chemical strategy against antibiotic resistance.
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