Related Experiment Video
Updated: Jun 27, 2026

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Modified string test to improve and confirm by molecular characterization for bacterial identification
Muhammad Dawood Mian1, Saadullah Jan Khan2,3, Rehana Rani1
1Department of Life Sciences, Abasyn University Islamabad Campus, Islamabad, Pakistan.
Abstract:
Rapid and reliable identification of bacteria is essential in clinical and environmental microbiology. Gram staining remains a widely used method for preliminary classification; however, it may require additional steps and can be difficult to interpret under certain conditions. To address these limitations, we evaluated a modified potassium hydroxide (KOH) string test incorporating methylene blue to enhance visualization of DNA release and facilitate differentiation between Gram-positive and Gram-negative bacteria. A total of 185 samples from clinical and environmental sources (including hospitals, soil, salt mines and honeycombs) were analysed. Samples were first assessed using Gram staining and subsequently tested using the modified KOH method. In this procedure, a 3% KOH solution was applied to bacterial colonies, followed by the addition of methylene blue to improve visualization of filament formation. All Gram-negative isolates demonstrated visible string formation, while Gram-positive isolates showed no string formation, indicating complete concordance with Gram staining results within the tested dataset. Selected isolates were further examined using 16S rRNA gene analysis to support taxonomic identification. The modified KOH string test provides a rapid, simple and low-cost approach for preliminary bacterial differentiation. While it does not replace conventional or molecular identification methods, it may serve as a useful complementary tool, particularly in resource-limited or high-throughput laboratory settings.
Related Concept Videos
Modern Molecular Taxonomy
Methods of Classification and Identification
Applications of Molecular Taxonomy
Rapid Identification of Pathogens
Differential Staining Technique
Special Staining Techniques

