Related Experiment Video
Updated: Jun 28, 2026

Using a Cyclic Ion Mobility Spectrometer for Tandem Ion Mobility Experiments
Published on: January 20, 2022
Molecular Framework Modification in Mass Spectrometry: Atom Exchange, Insertion, and Deletion.
Myles Q Edwards1, Dylan T Holden2, R Graham Cooks1
1Tarpo Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States.
Electrospray ionization mass spectrometry (ESI-MS) can induce molecular skeletal rearrangements, including atom exchange and insertion, within ring systems. This reactivity expands possibilities for mass spectrometry derivatization and late-stage functionalization.
Area of Science:
- Analytical Chemistry
- Organic Chemistry
- Mass Spectrometry
Background:
- Mass spectrometry (MS) is known to induce molecular rearrangements in gas-phase ions.
- Electrospray ionization (ESI) is a common ionization technique used in MS.
- Skeletal rearrangements involve changes in the carbon framework of molecules.
Purpose of the Study:
- To explore skeletal rearrangements occurring during the electrospray ionization (ESI) process.
- To investigate atom exchange, insertion, and deletion reactions within ring systems.
- To demonstrate the intrinsic reactivity of ESI-MS for molecular transformations.
Main Methods:
- Electrospray ionization mass spectrometry (ESI-MS).
- MSn and high-resolution MS (HRMS) for detailed analysis.
- Exact-mass measurements and isotopic distribution analysis for product identification.
- MS/MS fragmentation analysis and comparison with authentic standards.
Main Results:
- Observed skeletal rearrangements including atom exchange, insertion, and deletion in pre-existing ring systems.
- Demonstrated ESI-MS reactivity through reactions like Baeyer-Villiger oxidation, Beckmann rearrangement, Favorskii rearrangement, and a novel sulfur-for-oxygen exchange.
- Confirmed product identities using HRMS, isotopic patterns, and MS/MS fragmentation.
Conclusions:
- ESI-MS is an intrinsically reactive technique capable of inducing significant molecular framework modifications.
- These findings expand the scope of reactive MS derivatization.
- The study opens avenues for novel strategies in late-stage functionalization of molecules.
Related Concept Videos
Mass Spectrometry: Overview
Mass Spectrum: Interpretation
Mass Spectrometry: Molecular Fragmentation Overview
One type of fragmentation pattern is the cleavage of a single bond in the molecular ion. The cleavage leads to a radical and a cation. The cleavage can occur at...
Mass Spectrometers
Mass Spectrometry: Amine Fragmentation
In amines, the number of nitrogen atoms affects the mass of the molecular ion, which is described by the nitrogen rule of mass spectrometry. This rule states that a compound containing a single or...
Mass Spectrometry: Carboxylic Acid, Ester, and Amide Fragmentation
For example, the fragmentation of...

