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Published on: May 10, 2024
Upregulated Circular RNAs in Gastric Cancer: Target Identification and Tools for Therapeutic Intervention
Samuele Graziano1, Barbara Höllbacher2, Ulrich H Weidle3
1Computational Sciences Center of Excellence, F. Hoffmann-La Roche Ltd., Basel, Switzerland.
Abstract:
Surveying the literature (PubMed), we have identified upregulated circular RNAs involved in pathogenesis and dissemination of gastric cancer. We have focused on circRNAs that upregulate the following target classes or physiological processes: transmembrane receptors, secreted proteins, RNA metabolism and processing, ubiquitination, WNT signalling, ferroptosis and druggable enzymes. Circular RNAs upregulating targets for approved drugs in GC, such as vascular endothelial growth factor A (VEGF-A) and programmed death-ligand 1 (PD-L1), were identified, validating circRNAs as tools for target identification. We highlight targets and target classes that are frequently affected by circRNAs such as solute carrier (SLC) proteins, subtypes of heterogeneous nuclear RNA (hnRNA), ubiquitin-specific proteases (USPs) and targets related to inhibition of ferroptosis. We also highlight druggable enzymes as targets. We discuss technical issues for inhibition of the identified targets and their corresponding circular RNAs.
Insights
Circular RNAs are key players in gastric cancer (GC) progression. This study identifies specific circular RNAs that target pathways and proteins, offering new avenues for GC treatment and drug development.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Gastric cancer (GC) pathogenesis and dissemination involve complex molecular mechanisms.
- Circular RNAs (circRNAs) are increasingly recognized as critical regulators in various cancers, including GC.
- Understanding circRNA functions is crucial for developing novel therapeutic strategies.
Purpose of the Study:
- To identify upregulated circRNAs implicated in gastric cancer pathogenesis and dissemination.
- To investigate circRNA targets including transmembrane receptors, secreted proteins, RNA metabolism, ubiquitination, WNT signaling, ferroptosis, and druggable enzymes.
- To validate circRNAs as tools for identifying therapeutic targets for gastric cancer.
Main Methods:
- Comprehensive literature survey of PubMed database focusing on circRNAs in gastric cancer.
- Analysis of circRNA targets related to physiological processes and protein classes.
- Identification of circRNAs targeting pathways modulated by approved drugs for GC.
Main Results:
- Upregulated circRNAs involved in GC pathogenesis and dissemination were identified.
- Key target classes frequently affected by circRNAs include solute carrier (SLC) proteins, heterogeneous nuclear RNA (hnRNA) subtypes, and ubiquitin-specific proteases (USPs).
- CircRNAs targeting pathways of approved GC drugs like vascular endothelial growth factor A (VEGF-A) and programmed death-ligand 1 (PD-L1) were found, confirming circRNAs as target identification tools.
Conclusions:
- CircRNAs represent promising biomarkers and therapeutic targets in gastric cancer.
- Specific circRNAs modulate critical pathways such as WNT signaling and ferroptosis, and target druggable enzymes.
- Further research into the technical challenges of inhibiting these circRNAs and their targets is warranted for clinical translation.
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