Related Experiment Video
Updated: Jul 1, 2026

Imaging Intermediate Filaments and Microtubules with 2-dimensional Direct Stochastic Optical Reconstruction Microscopy
Published on: March 6, 2018
Large Stokes shift fluorophores from meta-substituted zwitterions
David T Hogan1, Alexander R Krappe1, Ralf Feyerherm2
1Institute of Chemistry and Biochemistry (SupraFAB), Freie Universität Berlin Altensteinstraße 23a 14195 Berlin Germany siegfried.eigler@fu-berlin.de.
None:
Many commonly used dye classes suffer from strong overlap of their absorption and emission spectra, favoring reabsorption and hampering the combination of several dyes for multi-analyte sensing with single wavelength excitation. This can be overcome by increasing the energy difference between absorption and emission using donor-acceptor dyes with charge-transfer processes. A neglected concept to finetune the Stokes shift is meta-substitution, which we exploited to design a single-benzene fluorophore exhibiting the largest Stokes shift of a zwitterionic compound. The meta-substitution of permanently-charged donor and acceptor groups provides a Stokes shift of >10 000 cm-1 (1.24 eV), absorbing light in the UV-region at 375 nm and emitting yellow-orange light at 605 nm. Relative to para-substitution, the orbitals are primed for more effective intramolecular charge-transfer and more energy is dissipated by structural reorganisation upon excitation, stemming from greater excited-state antiaromaticity. The large Stokes shift is retained by π-extended derivatives, thus meta-substitution of zwitterionic groups is a general way to design organic fluorophores with small spectral overlap.
Related Concept Videos
Super-resolution Fluorescence Microscopy
Protein Dynamics in Living Cells
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
