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Updated: Jul 2, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Genome-wide copy number analysis identifies AKT as a novel therapeutic target in pleural mesothelioma
Claudia Kalla1, Dina Mönch2, Sophia Steinlein1
1Dr. Margarete Fischer-Bosch Institute of Clinical Pharmacology, 70376 Stuttgart, Germany; Department of Clinical Pathology, Robert Bosch Hospital 70376 Stuttgart, Germany; Department of Clinical Pharmacology, University Hospital, University of Tübingen 72076 Tübingen, Germany.
Purpose:
Targeting aberrantly activated kinases in pleural mesothelioma (PM) is a promising therapeutic strategy. To identify potential candidates, we characterized recurrent chromosomal gains in PM and subsequently evaluated the specific inhibition of kinases that were activated by amplification and/or overexpression.
Methods:
42 primary PM were screened for chromosomal alterations using OncoScan technology and AKT expression was assessed using immunohistochemistry. The impact of Ipatasertib (pan-AKT inhibitor) and Sapanisertib (mTOR inhibitor) on cell survival, apoptosis induction, AKT/mTOR signaling, glycolysis was investigated in cell lines and primary cells. Preclinical anti-tumor efficacy was further assessed in a PDX model selected for AKT and mTOR expression.
Results:
OncoScan profiling identified eleven regions of significant chromosomal gains. Among them, 14q32.33 and 19q13.2 gains affected AKT1 and AKT2, members of the AKT serine/threonine protein kinase family. AKT1 protein was expressed in 66 % (60/91), AKT2 in 80 % (73/91) and AKT3 in 94 % (86/91) PM. 57 % PM co-expressed AKT1/AKT2/AKT3. Treatment with Ipatasertib impaired cell viability in PM cell lines and induced apoptosis. Combined treatment with Ipatasertib and Sapanisertib had a synergistic cytotoxic effect in all three cell lines and primary cells from two PM patients, even in Cisplatin-resistant cells. We also noted an improved response to the combination in a PDX model. Mechanistically, the combined treatment acted synergistically to inactivate AKT/mTOR downstream signaling, suppress glycolysis, and trigger ATP depletion.
Conclusions:
Our study demonstrates recurrent activation of AKT kinases by copy number gains and upregulated expression in PM. Pharmacological AKT and mTOR inhibition is a promising therapeutic alternative for mesothelioma.
Insights
Targeting AKT and mTOR kinases shows promise for pleural mesothelioma (PM) treatment. Combining AKT and mTOR inhibitors synergistically reduced cancer cell viability and tumor growth in preclinical models.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Pleural mesothelioma (PM) is a rare and aggressive cancer.
- Aberrant kinase activation is a key driver in PM pathogenesis.
- Targeting these kinases offers a potential therapeutic strategy.
Purpose of the Study:
- To identify recurrent chromosomal gains in PM.
- To evaluate the impact of inhibiting kinases activated by amplification or overexpression.
- To assess the therapeutic potential of AKT and mTOR inhibition in PM.
Main Methods:
- Chromosomal alterations in 42 primary PM samples were analyzed using OncoScan.
- AKT expression was assessed via immunohistochemistry.
- The effects of Ipatasertib (pan-AKT inhibitor) and Sapanisertib (mTOR inhibitor) were evaluated in cell lines, primary cells, and a PDX model.
Main Results:
- Recurrent chromosomal gains, including those affecting AKT1 and AKT2, were identified.
- High expression of AKT kinases was observed in PM samples.
- Combined Ipatasertib and Sapanisertib treatment demonstrated synergistic cytotoxicity and anti-tumor efficacy, even in resistant cells, by inhibiting AKT/mTOR signaling and glycolysis.
Conclusions:
- Recurrent activation of AKT kinases through copy number gains and overexpression is demonstrated in PM.
- Pharmacological inhibition of AKT and mTOR represents a promising therapeutic approach for mesothelioma.
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