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Related Concept Videos

Atomic Nuclei: Nuclear Relaxation Processes01:23

Atomic Nuclei: Nuclear Relaxation Processes

In the absence of an external magnetic field, nuclear spin states are degenerate and randomly oriented. When a magnetic field is applied, the spins begin to precess and orient themselves along (lower energy) or against (higher energy) the direction of the field. At equilibrium, a slight excess population of spins exists in the lower energy state. Because the direction of the magnetic field is fixed as the z-axis,  the precessing magnetic moments are randomly oriented around the z-axis. This...
Atomic Nuclei: Nuclear Spin State Overview01:03

Atomic Nuclei: Nuclear Spin State Overview

NMR-active nuclei have energy levels called 'spin states' that are associated with the orientations of their nuclear magnetic moments. In the absence of a magnetic field, the nuclear magnetic moments are randomly oriented, and the spin states are degenerate. When an external magnetic field is applied, the spin states have only 2 + 1 orientations available to them. A proton with = ½ has two available orientations. Similarly, for a quadrupolar nucleus with a nuclear spin value of one, the...
Directionality of Nuclear Transport01:42

Directionality of Nuclear Transport

Ras-related nuclear protein or Ran is a small G protein that cycles between its GTP and GDP bound states. Ran specific regulators, a Ran GTPase Activating Protein or RanGAP present in the cytosol and a Ran guanine nucleotide exchange factor or RanGEF present inside the nucleus regulate GTP/GDP exchange. A high concentration of GTP inside the cells, in addition to this asymmetric distribution of  Ran-specific regulators, leads to a higher RanGTP concentration inside the nucleus. This...
Atomic Nuclei: Nuclear Spin State Population Distribution01:14

Atomic Nuclei: Nuclear Spin State Population Distribution

Near absolute zero temperatures, in the presence of a magnetic field, the majority of nuclei prefer the lower energy spin-up state to the higher energy spin-down state. As temperatures increase, the energy from thermal collisions distributes the spins more equally between the two states. The Boltzmann distribution equation gives the ratio of the number of spins predicted in the spin −½ (N−) and spin +½ (N+) states.
Atomic Nuclei: Magnetic Resonance01:05

Atomic Nuclei: Magnetic Resonance

The number of nuclear spins aligned in the lower energy state is slightly greater than those in the higher energy state. In the presence of an external magnetic field, as the spins precess at the Larmor frequency, the excess population results in a net magnetization oriented along the z axis. When a pulse or a short burst of radio waves at the Larmor frequency is applied along the x axis, the coupling of frequencies causes resonance and flips the nuclear spins of the excess population from the...
Atomic Nuclei: Nuclear Magnetic Moment00:59

Atomic Nuclei: Nuclear Magnetic Moment

All atomic nuclei are positively charged. When they have a nonzero spin, they behave like rotating charges. As a consequence of their charge and spin, these nuclei generate a magnetic field (B). This, in turn, gives rise to a magnetic moment (μ), which is randomly oriented in the absence of an external magnetic field. When an external magnetic field (B0) is applied, the magnetic moment vectors can align with the field or against it in 2 + 1 orientations. A hydrogen nucleus, which is just a...

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Updated: Jul 2, 2026

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
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Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method

Published on: July 19, 2019

Nuclear Gradients from Auxiliary-Field Quantum Monte Carlo and Their Applications in ML-Driven Geometry Optimization

Jo S Kurian1, Ankit Mahajan2, Sandeep Sharma1,3,4

  • 1Department of Chemistry, University of Colorado, Boulder, Colorado 80302, United States.

Journal of Chemical Theory and Computation
|July 1, 2026
PubMed
Summary

We developed a new method for accurate nuclear force calculations using phaseless auxiliary-field quantum Monte Carlo (AFQMC). This approach enables efficient geometry optimizations and reaction path calculations with machine learning potentials.

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Methods of Ex Situ and In Situ Investigations of Structural Transformations: The Case of Crystallization of Metallic Glasses
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Published on: June 7, 2018

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Last Updated: Jul 2, 2026

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
05:51

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method

Published on: July 19, 2019

Methods of Ex Situ and In Situ Investigations of Structural Transformations: The Case of Crystallization of Metallic Glasses
08:55

Methods of Ex Situ and In Situ Investigations of Structural Transformations: The Case of Crystallization of Metallic Glasses

Published on: June 7, 2018

Area of Science:

  • Computational Chemistry
  • Quantum Mechanics
  • Materials Science

Background:

  • Accurate calculation of nuclear forces is crucial for predicting molecular properties and reaction pathways.
  • Existing methods can be computationally expensive, limiting their application to large systems or complex dynamics.
  • Phaseless auxiliary-field quantum Monte Carlo (AFQMC) offers a promising quantum mechanical approach but requires efficient force computation.

Purpose of the Study:

  • To develop and validate a method for computing nuclear forces within the AFQMC framework.
  • To integrate machine learning (ML) strategies for handling noisy AFQMC data.
  • To demonstrate the application of ML-derived potentials for molecular structure and reaction path calculations.

Main Methods:

  • Leveraging automatic differentiation of the energy functional to compute nuclear gradients.
  • Validating the accuracy of computed forces against finite difference calculations.
  • Employing machine learning models to learn from noisy AFQMC energy data.
  • Performing geometry optimizations and nudged elastic band (NEB) calculations using ML potentials.

Main Results:

  • Achieved computational cost for nuclear forces comparable to energy evaluation.
  • Demonstrated excellent agreement between AFQMC-derived forces and finite difference results.
  • Successfully identified the transition state for formamide-formimidic acid tautomerization using ML potentials.
  • Obtained transition-state geometries and barrier heights in close agreement with high-level coupled-cluster reference values.

Conclusions:

  • The developed method enables accurate and scalable nuclear force calculations within AFQMC.
  • ML potentials trained on AFQMC data can reliably predict molecular structures and reaction pathways.
  • This work facilitates highly accurate geometry optimizations, molecular dynamics, and reaction path calculations.