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Related Experiment Video

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Transverse Sectioning of Mature Rice (Oryza sativa L.) Kernels for Scanning Electron Microscopy Imaging Using Pipette Tips as Immobilization Support
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Published on: January 25, 2022

Fine-grained 3D rice phenotyping via multi-scale NeRF and multimodal segmentation.

Fang Qu1,2, Longhui Fang3, Juncai Wang1,2

  • 1Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China.

Plant Phenomics (Washington, D.C.)
|July 1, 2026
PubMed
Summary

We developed novel methods for 3D rice reconstruction and segmentation, creating a valuable multimodal rice dataset. These advancements improve fine-grained analysis for rice breeding and yield estimation.

Keywords:
3D reconstruction3D segmentationNeural radiance fieldsPlant phenotypingRice grain

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Area of Science:

  • Agricultural Science
  • Computer Vision
  • Data Science

Background:

  • Fine-grained 3D phenotypic analysis is crucial for rice breeding and yield estimation.
  • Existing 3D reconstruction methods like Neural Radiance Fields (NeRF) struggle with rice due to data volume and viewpoint sensitivity.
  • Challenges in rice point cloud segmentation include occlusion and grain similarity, hindering trait extraction.

Purpose of the Study:

  • To develop a comprehensive pipeline for rice data acquisition and segmentation.
  • To address the limitations of existing methods in reconstructing rice point clouds under low-quality data conditions.
  • To create a benchmark dataset and advanced models for rice plant analysis.

Main Methods:

  • Proposed Multi-Scale NeRF (MSNeRF) with a structure-detail collaborative reconstruction and dynamic initialization density scheduling.
  • Introduced a multimodal and multitask rice dataset (MMR) for benchmarking.
  • Developed Vision Rice Knowledge Graph Network (VRKGNet) for point cloud segmentation, integrating image segmentation priors.

Main Results:

  • MSNeRF achieved high-fidelity point cloud reconstruction using as few as 10 viewpoints.
  • VRKGNet demonstrated superior rice plant segmentation, achieving 88.79% mIoU for semantic segmentation and 84.55% AP25 for instance segmentation.
  • The proposed methods outperformed mainstream algorithms in reconstruction and segmentation tasks.

Conclusions:

  • The developed MSNeRF and VRKGNet provide effective solutions for 3D rice reconstruction and segmentation.
  • The MMR dataset serves as a valuable resource for future research in computational agriculture.
  • These advancements contribute to improved rice breeding and yield estimation through detailed phenotypic analysis.