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Related Experiment Videos

Practical Considerations for Gaussian Process Modeling for Causal Inference in Quasi-Experimental Studies With Panel

Sofia L Vega1, Rachel C Nethery1

  • 1Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.

Statistics in Medicine
|July 1, 2026
PubMed
Summary

Gaussian processes (GPs) offer a flexible approach to estimate causal effects in spatio-temporal panel data by addressing unmeasured confounding. This method provides interpretable results for quasi-experimental studies.

Keywords:
counterfactual predictionkernel selectionpolicy evaluationspatio‐temporal dataunmeasured confounding

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Area of Science:

  • Statistics
  • Econometrics
  • Epidemiology

Background:

  • Quasi-experimental studies with spatio-temporal panel data often face challenges due to unmeasured confounding.
  • Traditional methods may struggle to capture complex spatial and temporal dependencies inherent in such data.

Purpose of the Study:

  • To introduce a practical and interpretable framework for applying Gaussian processes (GPs) to causal inference in spatio-temporal panel data.
  • To demonstrate how GPs can generalize existing methods like synthetic control and vertical regression.

Main Methods:

  • Utilized Gaussian processes (GPs), a nonparametric modeling approach, employing carefully chosen covariance kernels to handle complex spatio-temporal dependencies.
  • Represented the GP posterior mean as a weighted average of observed outcomes, with weights indicating spatial and temporal similarity.

Main Results:

  • Gaussian processes (GPs) effectively estimate counterfactual outcomes and quantify treatment effects in spatio-temporal settings.
  • The study explored the impact of different kernel choices on estimation performance and interpretability, providing guidance for practical application.
  • Demonstrated the utility of GP models through simulations and an application to Hurricane Katrina mortality data.

Conclusions:

  • Gaussian processes (GPs) present a promising and interpretable tool for mitigating unmeasured spatio-temporal confounding in quasi-experimental research.
  • The framework enhances causal inference by offering flexibility and transparency in modeling complex data structures.
  • Publicly available code and materials aim to promote reproducibility and wider adoption of this methodology.