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Published on: June 6, 2025
Functional characterization of a biallelic MIPEP variant associated with global developmental delay, infantile
Benedetta Ruzzenente1, Pierre-Hadrien Becker2, Elissa Afram1
1Genetics of rare ophthalmological, auditory, and mitochondrial disorders, INSERM UMR1163, Université Paris Cité, Institut Imagine, Paris, France.
Abstract:
The mitochondrial intermediate peptidase (MIP) catalyzes the post-import removal of an N-terminal octapeptide from a subset of nuclear-encoded mitochondrial proteins. While the mechanistic role of this processing remains unclear, biallelic MIPEP variants have been linked to respiratory chain dysfunction and mitochondrial disease. Patients expressing these variants most often presented with cardiomyopathy, variable neurological defects, and early mortality. Here, we report the identification and functional characterization of a homozygous MIPEP variant in a patient presenting with a comparatively milder clinical phenotype involving global developmental delay, infantile epileptic spasms syndrome, and hypotonia. Analyses of patient-derived fibroblasts revealed reduced MIP abundance and impaired processing of established MIP substrates MRPL12, NDUFV2, and ATP5F1. Expression of wild-type MIPEP restored these defects, confirming the pathogenic nature of the variant. Thus, our findings expand the genetic and phenotypic spectrum of MIPEP-linked disease.
Insights
Mitochondrial intermediate peptidase (MIP) variants cause mitochondrial disease. This study identifies a new variant linked to milder developmental delay and epilepsy, expanding the known genetic and clinical spectrum of MIPEP-associated disorders.
Area of Science:
- Biochemistry
- Genetics
- Cell Biology
Background:
- Mitochondrial intermediate peptidase (MIP) processes mitochondrial proteins.
- Biallelic MIPEP variants are associated with severe mitochondrial disease, including cardiomyopathy and neurological defects.
- The precise role of MIP in mitochondrial function and disease pathogenesis requires further elucidation.
Purpose of the Study:
- To identify and functionally characterize a novel homozygous MIPEP variant.
- To investigate the impact of this variant on MIP function and substrate processing.
- To expand the understanding of the genetic and phenotypic spectrum of MIPEP-linked mitochondrial disorders.
Main Methods:
- Genetic analysis of a patient with developmental delay and epilepsy.
- Functional characterization of the identified MIPEP variant using patient-derived fibroblasts.
- Assessment of MIP abundance and processing of known MIP substrates (MRPL12, NDUFV2, ATP5F1).
Main Results:
- A novel homozygous MIPEP variant was identified in a patient with a milder phenotype including global developmental delay, infantile epileptic spasms syndrome, and hypotonia.
- Patient fibroblasts showed reduced MIP protein levels and impaired processing of MIP substrates.
- Complementation with wild-type MIPEP restored normal MIP function and substrate processing.
Conclusions:
- The identified MIPEP variant is pathogenic and expands the known clinical spectrum of MIPEP-linked mitochondrial disease.
- This finding highlights the role of MIP in neurodevelopment and suggests a genotype-phenotype correlation.
- Further research into MIP function is crucial for understanding mitochondrial disorders.
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