Related Experiment Video
Updated: Jul 3, 2026

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
Published on: July 19, 2019
Improving PCM in Protic Media: Markov State Models for TD-DFT Calculations
Nicolás A Rodríguez1, Carlos A Chesta2,3, D Mariano A Vera1,4
1Instituto de Química y Bioquímica de Mar del Plata, Departamento de Química y Bioquímica, Facultad de Ciencias Exactas y Naturales (UNMdP), Mar del Plata B7602AYL, Buenos Aires, Argentina.
Predicting dye optical properties in protic solvents needs advanced methods beyond continuum models. A new workflow combining molecular dynamics, Markov State Models, and TD-DFT offers a cost-effective approach for accurate spectral prediction.
Area of Science:
- Computational Chemistry
- Spectroscopy
- Materials Science
Background:
- Accurately predicting optical properties of dyes in protic media is challenging.
- Standard polarizable continuum models (PCM) often fail to capture specific solute-solvent interactions.
Purpose of the Study:
- To introduce a novel computational workflow for predicting optical properties of dyes in protic solvents.
- To improve the accuracy and cost-effectiveness of modeling electronic excitations in complex systems.
Main Methods:
- Combining molecular dynamics (MD) simulations, time-lagged independent component analysis (TICA), and Markov State Models (MSM).
- Utilizing time-dependent density functional theory (TD-DFT) with explicit H-bonded solvent molecules.
- Developing an MSM(PCM)TD-DFT approach for analyzing system configurations.
Main Results:
- Identified key system configurations and macrostates relevant for electronic excitation modeling.
- Demonstrated that a few thermally accessible, non-optimized geometries can better represent experimental spectra than optimized structures.
- Validated the approach on compounds with strong charge-transfer character.
Conclusions:
- The MSM(PCM)TD-DFT workflow provides a promising and cost-effective method for understanding dye behavior in protic media.
- This approach enhances the predictive power for optical properties by accounting for crucial solute-solvent interactions.
More Related Videos
12:11Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
Published on: April 8, 2020
09:17Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
Published on: March 1, 2022
Related Concept Videos
¹³C NMR: Distortionless Enhancement by Polarization Transfer (DEPT)
Time-Domain Interpretation of PD Control
Consider the example of control of motor torque. Initially, a positive...
Double Resonance Techniques: Overview
Spin decoupling is usually achieved by...
Frequency-Domain Interpretation of PD Control
The proportional control gain, combined with the system's...