Changes in 3-Dimensional Intrahepatic Biliary Structures in Patients With Hepatobiliary Diseases Visualized Using Tissue Clearing Methods
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Published on: February 13, 2026
Motoko Sasaki1, Yasunori Sato1, Yasuni Nakanuma2
1Department of Human Pathology, Kanazawa University Graduate School of Medical Sciences, Kanazawa, Japan.
Purpose:
Biliary lesions, including ductular reactions and biliary obstruction, are involved in the pathophysiology of human hepatobiliary diseases. However, little is known about the 3-dimensional (3D) biliary structures associated with these diseases. We examined pathological changes in 3D structures in human chronic liver diseases using tissue clearing methods.
Materials And Methods:
Thirty autopsied liver tissues were obtained from 2 patients with advanced primary biliary cholangitis, 6 with cirrhosis (viral hepatitis, 3; alcoholic liver disease, 2; and metabolic dysfunction-associated steatotic liver disease, 1), 4 with mild fibrosis (viral, 1; alcoholic liver disease, 1; and metabolic dysfunction-associated steatotic liver disease, 2), and 18 with nonspecific reactive (NSR) changes. Liver tissues were fixed in formalin and cleared using the clear, unobstructed brain/body imaging cocktails methods or rapid and nondestructive tissue clearing system. Three-dimensional imaging of biliary structures was performed using immunostaining with Alexa Fluor 488-labeled anti-cytokeratin (CK)19 and light sheet fluorescence microscopy. The number of CK19-positive biliary components per portal tract and the degrees of biliary networks in the portal tract, anastomoses, bridging formation, meandering, and caliber variation in 3D images were evaluated semiquantitatively.
Results:
Three-dimensional biliary structures were clearly visualized by tissue clearing methods and light sheet fluorescence microscopy. The number of biliary components was significantly higher with cirrhosis than with NSR changes (P < .05). The degrees of anastomoses and bridging formation were significantly increased in cirrhosis compared with other groups (P < .01). The degrees of biliary networks and meandering were significantly higher with cirrhosis than with mild fibrosis and NSR changes (P < .01). The number of biliary components and other factors was not elevated in the 2 cases of advanced primary biliary cholangitis examined. The number of biliary components and degrees of 3D biliary features correlated with the results of various liver function tests (P < .01).
Conclusions:
Three-dimensional imaging using the tissue clearing methods may be a promising strategy to examine pathological changes in human intrahepatic biliary structures in patients with various human hepatobiliary diseases.

