Related Experiment Video
Updated: Jul 4, 2026

A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
CAS2FHIR: Transforming UIMA CAS Annotations to FHIR Bundles
Nektarios Ladas1,2, Stefan Franz1, Sarah Ballout1
1Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany.
None:
In our location, we have clinical data in various formats. Some of them are either unstructured or semi-structured. While they contain valuable information, to be able to use it further for research, we have to convert them into an interoperable standard, like FHIR. We have developed a tool that can map and create FHIR resources or bundles directly from the results of the Information Extraction pipeline. This is based on a scripting language that dynamically invokes runtime API methods to create FHIR data. We successfully transformed 13,240 FHIR resources into bundles.
Related Concept Videos
Source Transformation
It is essential to note that when...
Gene Families
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
Gene Families
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
FISH - Fluorescent In-situ Hybridization
Assembly of Signaling Complexes
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Fibril-associated Collagen
For example, the type II collagen fibrils in cartilage have covalently bound type IX fibril-associated collagens at regular intervals. Other types of fibril-associated collagens are...