ASCT: a pipeline for standardized analysis of MEG/EEG directional connectivity. Practical guidelines for applications...

The article presents the Atlantis Source Connectivity Toolbox (ASCT), a pipeline for the complete analysis of source-based directed (effective) connectivity from MEG/EEG signals. Connectivity estimation is implemented with the Directed Transfer Function, a multivariate autoregressive method grounded in the Granger causality approach. The theoretical concepts and challenges in source reconstruction and causal inferences from electrophysiological and biomagnetic recordings are introduced. Importantly, the guidelines for the custom analyses are also presented together with the toolbox user manual. By providing the complete analytic pipeline with practical recommendations, we intend to support standardization and replicability in connectivity studies. The validation of the method is further demonstrated with simulated MEG data, prepared from real resting data recording, as well as with realistic EEG data from the Eriksen flanker task. Our results highlight the importance of routine use of the leakage correction that prevents the appearance of spurious links. We also discuss potential benefits of source separation prior to their reconstruction for more accurate estimates of connectivity.