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Published on: May 1, 2012
Visualizing and Braking Protein Ring Flips with Difluorotyrosines
Meng Lu1,2, Wenkai Zhu1,2, Guohua Xu1,2
1State Key Laboratory of Magnetic Resonance Spectroscopy and Imaging, National Center for Magnetic Resonance in Wuhan, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, P. R. China.
Abstract:
Aromatic ring-flip dynamics are hallmarks of concerted protein "breathing" motions that are essential for biological function. However, accurately measuring-and especially modulating-ring-flip dynamics remains challenging, particularly in living cells. Here, we demonstrate that 19F NMR is powerful for quantifying ring flips on the μs-s time scale. Using cost-effective difluorotyrosine probes, 3,5-F2Y and 2,6-F2Y, we detect the previously hidden tyrosine ring flips (τflip ≈ 15 μs) in ubiquitin. Importantly, 3,5-F2Y is a largely nonperturbing ring-flip probe while 2,6-F2Y acts as an effective "brake", slowing ring flips by ∼103-fold in GB1 and HPr. We further evaluate how macromolecular crowding and the intracellular environment modulate ring-flip dynamics. Our work opens new avenues for measuring and modulating ring flips in vitro and in living cells.

