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An interpretable machine learning model for predicting febrile seizures following enterovirus infection in children
Yonghan Luo1,2, Yuemei Feng3, Yan Guo1,4
1Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Insights
This study developed an interpretable XGBoost model to predict Febrile Seizure (FS) risk in children with Enterovirus (EV) infections. A web-based calculator aids clinical risk stratification and management.
Area of Science:
- Pediatric Infectious Diseases
- Computational Biology
- Machine Learning in Medicine
Background:
- Enterovirus (EV) infections are common in children.
- Febrile Seizures (FS) are a frequent complication of EV infections.
- Accurate risk prediction for FS is crucial for clinical management.
Purpose of the Study:
- To develop an interpretable machine learning model for predicting FS risk in children with EV infections.
- To implement the model for clinical application and risk stratification.
- To identify key clinical predictors of FS in this population.
Main Methods:
- Retrospective study of 446 children with EV infection.
- Feature selection using LASSO regression and BORUTA algorithm from 53 clinical variables.
- Development and evaluation of six machine learning models (XGBoost, logistic regression, KNN, Naive Bayes, MLP, random forest) using AUC, sensitivity, specificity, F1 score, and Decision Curve Analysis (DCA).
- Interpretability analysis using SHAP values.
- Development of a web-based calculator using a Shiny application.
Main Results:
- The XGBoost model achieved high predictive performance: training AUC 0.972, internal validation AUC 0.842.
- Key predictors identified include fever duration, disease course, immunoglobulin M, neutrophil count, fibrinogen, and various immune cell percentages.
- SHAP analysis confirmed model interpretability, and DCA supported its clinical applicability.
- A user-friendly web-based calculator was developed for personalized risk assessment.
Conclusions:
- The developed XGBoost model offers high accuracy and clinical interpretability for predicting FS risk in children with EV infections.
- The web-based calculator provides a valuable tool for risk stratification and guiding management decisions.
- This approach enhances the clinical utility of machine learning in pediatric infectious disease management.
Objective:
This study aims to develop an interpretable machine learning model for predicting the risk of FS in children with enterovirus (EV) infections and to implement it for clinical application.
Methods:
This retrospective study included 446 hospitalized children with EV infection (144 FS, 302 non‑FS). LASSO regression and BORUTA algorithm selected 15 key predictors from 53 clinical variables. Six models (logistic regression, KNN, Naive Bayes, MLP, random forest, XGBoost) were constructed and evaluated using AUC, sensitivity, specificity, F1 score, and decision curve analysis. SHAP values provided interpretability, and a Shiny web‑based calculator was developed.
Results:
The XGBoost model demonstrated the best predictive performance: the training set AUC reached 0.972 (95% CI: 0.958-0.987), with sensitivity of 0.892 and specificity of 0.905. The internal validation set achieved an AUC of 0.842 (95% CI: 0.757-0.926). DCA confirmed its strong clinical applicability. SHAP analysis identified key features contributing to the model: fever duration, disease course, immunoglobulin M, neutrophil count, fibrinogen, CD8+ T-cell percentage, aspartate aminotransferase, CD3+ T-cell percentage, procalcitonin, presence of hand-foot herpes lesions, CD19+ B-cell percentage, erythrocyte sedimentation rate, lymphocyte count, serum ferritin level, and alanine aminotransferase. The 'Shiny' calculator facilitates personalized risk assessment.
Conclusion:
The XGBoost predictive model developed in this study demonstrated both high accuracy and clinical interpretability. The associated web-based calculator offers a new tool for risk stratification and management of FS in children with EV infections.
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