Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

State Space Representation01:27

State Space Representation

The frequency-domain technique, commonly used in analyzing and designing feedback control systems, is effective for linear, time-invariant systems. However, it falls short when dealing with nonlinear, time-varying, and multiple-input multiple-output systems. The time-domain or state-space approach addresses these limitations by utilizing state variables to construct simultaneous, first-order differential equations, known as state equations, for an nth-order system.
Consider an RLC circuit, a...
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
Model Approaches for Pharmacokinetic Data: Distributed Parameter Models01:06

Model Approaches for Pharmacokinetic Data: Distributed Parameter Models

Pharmacokinetic models are mathematical constructs that represent and predict the time course of drug concentrations in the body, providing meaningful pharmacokinetic parameters. These models are categorized into compartment, physiological, and distributed parameter models.
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
Multicompartment Models: Overview01:14

Multicompartment Models: Overview

Multicompartment models are mathematical constructs that depict how drugs are distributed and eliminated within the body. They segment the body into several compartments, symbolizing various physiological or anatomical areas connected through drug transfer processes such as absorption, metabolism, distribution, and elimination.
These models offer a more comprehensive representation of drug behavior in the body than one-compartment models. They accommodate the complexity of drug distribution,...
Mechanistic Models: Overview of Compartment Models01:21

Mechanistic Models: Overview of Compartment Models

Mechanistic models, a category encompassing both physiological and compartmental modeling, differ from empirical models' approaches to incorporating known factors about the systems being modeled. Empirical models describe data with minimal assumptions, while mechanistic models aim to provide a robust description of available data by specifying assumptions and integrating known factors about the system. Compartmental analysis is a key example of a mechanistic model in pharmacokinetics and...
State Space to Transfer Function01:21

State Space to Transfer Function

The conversion of state-space representation to a transfer function is a fundamental process in system analysis. It provides a method for transitioning from a time-domain description to a frequency-domain representation, which is crucial for simplifying the analysis and design of control systems.
The transformation process begins with the state-space representation, characterized by the state equation and the output equation. These equations are typically represented as:

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

A WEb-Accessible comprehensiVE platform for automatic vestibular schwannoma segmentation and longitudinal volumetric tracking.

Neuro-oncology advances·2026
Same author

Vertebral fracture following primary stereotactic body radiation therapy for spinal bone metastases: a decade of experience.

Journal of neurosurgery. Spine·2025
Same author

Primary Stereotactic Body Radiation Therapy for Breast Cancer Spinal Metastases.

Clinical breast cancer·2025
Same author

Use of Carbon Fiber Implants to Improve the Safety and Efficacy of Radiation Therapy for Spine Tumor Patients.

Brain sciences·2025
Same author

Single- versus multi-fraction spine stereotactic radiosurgery (ALL-STAR) for patients with spinal metastases: a randomized phase III trial protocol.

BMC cancer·2025
Same author

Primary Stereotactic Body Radiotherapy for Spinal Bone Metastases From Lung Adenocarcinoma.

Clinical lung cancer·2024

Related Experiment Videos

Neural Representation Learning for Compact and Efficient Modeling of Monte Carlo Phase Space Data.

Serdar Charyyev1, Cynthia Chuang1, Yong Yang1

  • 1Department of Radiation Oncology, Stanford University, Palo Alto, CA 94305, USA.

International Journal of Particle Therapy
|July 12, 2026
PubMed
Summary

NeRP-MC, a novel neural network, significantly reduces radiation therapy simulation data size and computation time. This approach maintains high dosimetric accuracy, making advanced Monte Carlo simulations more clinically feasible.

Keywords:
Implicit neural networksMonte CarloNeural representation learningPhase space dataProtons

Related Experiment Videos

Area of Science:

  • Medical Physics
  • Computational Biology
  • Radiotherapy

Background:

  • Monte Carlo (MC) simulations are the gold standard for radiation therapy dose calculations.
  • Large phase space (PHSP) files generated by MC simulations hinder clinical implementation due to storage and computational demands.

Purpose of the Study:

  • To develop and evaluate NeRP-MC, the first neural representation learning approach for modeling particle distributions in PHSP data.
  • To assess NeRP-MC's ability to model particle distributions using minimal training data.

Main Methods:

  • Investigated proton PHSP modeling at 242 and 140 MeV using TOPAS to generate reference PHSP files.
  • Trained a multi-layer perceptron with Fourier feature encoding to predict particle energies from spatial and momentum data.
  • Evaluated NeRP-MC in three scenarios: compact energy modeling, sparse data modeling, and replacement of PHSP with parametric Gaussian distributions and network-predicted energies.

Main Results:

  • The NeRP-MC model requires only 600 KB storage, a significant reduction from the original 3 GB PHSP file.
  • NeRP-MC predicted 25 million particle energies in under 0.5 seconds on an NVIDIA A100 GPU.
  • In-water dose distributions showed excellent agreement with reference data, with gamma pass rates exceeding 99% at 3%/2 mm and 90% at 1%/1 mm.

Conclusions:

  • NeRP-MC enables compact modeling and fast prediction of particle energies, offering a potential replacement for large-scale PHSP files.
  • This approach can substantially reduce computational and storage requirements for MC simulations in radiation therapy.
  • NeRP-MC promises to advance MC simulation efficiency while maintaining crucial dosimetric accuracy for clinical applications.