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Riding toward Selectivity: Optimization of Covalent 7-Azaindole-Based BMX Kinase Inhibitors
Xiaojun Julia Liang1,2,3, Claudia Albertini3,4, Thales Kronenberger3,5,6,7
1Department for Medicinal Chemistry, Institute for Biomedical Engineering, Faculty of Medicine, University of Tübingen, Auf der Morgenstelle 8, 72076 Tübingen, Germany.
Abstract:
The tyrosine kinase expressed in hepatocellular carcinoma (TEC) family comprises five nonreceptor tyrosine kinases─BTK, ITK, BMX, TXK, and TEC─with key roles in immune signaling. Although BTK and ITK have been extensively studied, selective inhibitors for TEC, TXK, and BMX remain scarce. Recently, we identified 7-azaindole-based covalent BMX inhibitors with potent inhibitory activity and robust cellular target engagement but limited selectivity across TEC family members, especially BTK. Here, we describe a new generation of BMX inhibitors designed to exploit subtle structural differences between BMX and BTK by incorporating diverse N-acylamino substituents at the azaindole 5-position or variations at the linker and warhead. Our compounds display subnanomolar BMX potency and improved selectivity over BTK and other TEC kinases. Key compound 11i showed strong cellular target engagement, good in vitro metabolic stability, a favorable kinome profile, and rapid covalent inactivation kinetics, positioning it among the best BMX chemical probes currently available.
Insights
Researchers developed new BMX inhibitors targeting the TEC kinase family for immune signaling. These novel compounds show high potency and selectivity against BMX, offering improved chemical probes for research.
Area of Science:
- Biochemistry
- Immunology
- Medicinal Chemistry
Background:
- The tyrosine kinase expressed in hepatocellular carcinoma (TEC) family, including BTK, ITK, BMX, TXK, and TEC, is crucial for immune signaling.
- While BTK and ITK are well-studied, selective inhibitors for BMX, TXK, and TEC are limited.
- Previous 7-azaindole-based BMX inhibitors showed potent activity but lacked selectivity, particularly against BTK.
Purpose of the Study:
- To design and synthesize a new generation of BMX inhibitors with enhanced selectivity over BTK and other TEC kinases.
- To identify potent and selective chemical probes for studying BMX function in immune signaling.
Main Methods:
- Structure-based drug design exploiting subtle differences between BMX and BTK.
- Synthesis of novel 7-azaindole derivatives with modifications at the 5-position, linker, and warhead.
- Biochemical and cellular assays to evaluate inhibitory activity, selectivity, target engagement, and metabolic stability.
Main Results:
- The new compounds demonstrated subnanomolar potency against BMX.
- Improved selectivity was observed for BMX over BTK and other TEC kinases.
- Compound 11i exhibited strong cellular target engagement, good in vitro metabolic stability, and a favorable kinome profile.
- Compound 11i displayed rapid covalent inactivation kinetics.
Conclusions:
- The developed BMX inhibitors represent a significant advancement in targeting the TEC kinase family.
- Compound 11i is a promising chemical probe for further research into BMX biology and its role in immune signaling.
- These findings provide a foundation for developing more selective inhibitors for other TEC kinases.
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