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Drug-tolerant persisters to TRAIL emerge from a dose-dependent surface in a cell-state continuum of sensitivity
Giada Fiandaca1,2, Marielle Péré1,3, Kelian Bonhomme1,3
1Inria, INRAE, CNRS, MACBES Team, Université Côte d'Azur, Valbonne, France.
Abstract:
Clonal cancer cells show heterogeneous responses to cytotoxic drugs, raising the question of whether this variability reflects discrete phenotypes or a continuum of underlying cell states. We address this by quantifying single-cell caspase-8 activation dynamics after TRAIL treatment and developing an extended mechanistic model of the extrinsic apoptosis pathway that incorporates c-FLIP-mediated control of initiator caspase activation. Fitting this model to individual trajectories across multiple doses recovers cell-specific procaspase-8 and c-FLIP abundances, together with three kinetic parameters, and reproduces the full diversity of observed responses. Embedding these inferred parameters into a shared state space reveals that sensitive and tolerant outcomes do not correspond to discrete subpopulations. Instead, a single biochemical pathway generates a continuous distribution of cell states whose position at treatment determines fate. Linking each trajectory to its early activation rate identifies a dose-dependent hyperplane that partitions this landscape into apoptotic and tolerant regions. Increasing drug dose translates this decision surface predictably, altering the outcome only for cells positioned near the boundary. This geometric perspective explains fractional killing in clonal populations and shows how drug-tolerant persister cells can arise from reversible variation in cell state. It further suggests that shifting state-space distributions relative to the decision surface may offer new strategies to limit persistence.
Insights
Cancer cells exhibit varied responses to drugs, not due to distinct types but a spectrum of cell states. A new model reveals a continuous pathway determines cell fate, impacting drug tolerance and persistence.
Area of Science:
- Cellular biology
- Quantitative biology
- Biophysics
Background:
- Clonal cancer cell populations display heterogeneous responses to cytotoxic drugs, prompting investigation into the underlying mechanisms of drug sensitivity and tolerance.
- Understanding whether this variability stems from discrete cellular phenotypes or a continuum of cell states is crucial for effective cancer therapy.
Purpose of the Study:
- To quantify single-cell caspase-8 activation dynamics following TRAIL treatment.
- To develop and validate an extended mechanistic model of the extrinsic apoptosis pathway, incorporating c-FLIP-mediated control of initiator caspase activation.
Main Methods:
- Single-cell analysis of caspase-8 activation dynamics after TRAIL treatment.
- Development of a mechanistic model for the extrinsic apoptosis pathway with c-FLIP regulation.
- Model fitting to individual cell trajectories across multiple drug doses to infer cell-specific parameters.
Main Results:
- The mechanistic model successfully reproduced the diverse responses of individual cells to TRAIL treatment.
- Inferred cell-specific procaspase-8 and c-FLIP abundances, along with kinetic parameters, were recovered.
- Analysis revealed that drug-sensitive and drug-tolerant outcomes arise from a continuous distribution of cell states, not discrete subpopulations.
Conclusions:
- A single biochemical pathway generates a continuous spectrum of cell states that dictate apoptosis or tolerance upon drug treatment.
- Drug tolerance and fractional killing in clonal populations can be explained by reversible variations within this continuous cell state distribution.
- Modulating cell state distributions relative to a dose-dependent decision surface presents potential strategies to overcome drug persistence.
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