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Assessing Cellular Target Engagement by SHP2 (PTPN11) Phosphatase Inhibitors
Published on: July 17, 2020
Uncompetitive Allosteric Inhibition of PTP1B by BP-1-102 Reveals a Potential Dual-Target Strategy toward the
Martín González-Andrade1, Rodolfo A Lizárraga-Valadez1, Alejandro Sosa-Peinado2
1Laboratorio de Biosensores y Modelaje Molecular, Departamento de Bioquímica, Facultad de Medicina, Universidad Nacional Autónoma de México, Ciudad de México 04510, México.
Abstract:
Selective PTP1B inhibitors paradoxically potentiate oncogenic STAT3 signaling by restoring JAK2 activity, underscoring the need for dual-target strategies. Here we report that BP-1-102, an orally bioavailable STAT3 SH2 domain inhibitor, also potently inhibits PTP1B with IC50 values of 5.32 μM (hPTP1B1-400) and 11.7 μM (hPTP1B1-285), with ≥37.7-fold selectivity over TCPTP. Kinetic analysis identified an uncompetitive mechanism, suggesting inhibitor binding to the enzyme-substrate complex at a site distal to the active site. Docking and 500 ns molecular dynamics simulations revealed a dual-anchor binding mode involving the 113-123 loop (Cys121) and the proline-rich C-terminal disordered region, a structural interface absent in TCPTP. Umbrella sampling confirmed favorable passive membrane permeability through a tumor-mimetic bilayer (ΔG = -13.83 kcal/mol). These results propose BP-1-102 as a candidate for dual-function inhibitor of the PTP1B-JAK2-STAT3 oncogenic axis, providing a physicochemical and mechanistic rationale for its further evaluation in tumors where both targets are coactivated.
Insights
A novel dual-target inhibitor, BP-1-102, effectively inhibits both protein tyrosine phosphatase 1B (PTP1B) and Signal Transducer and Activator of Transcription 3 (STAT3) signaling. This dual action offers a promising strategy against cancers co-activating these oncogenic pathways.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- Selective protein tyrosine phosphatase 1B (PTP1B) inhibitors can paradoxically enhance oncogenic STAT3 signaling by reactivating JAK2.
- This highlights the need for dual-target strategies to effectively inhibit the PTP1B-JAK2-STAT3 axis in cancer.
Purpose of the Study:
- To investigate BP-1-102, an orally bioavailable inhibitor, for its dual inhibitory activity against PTP1B and STAT3.
- To elucidate the mechanism of action and binding mode of BP-1-102.
Main Methods:
- Enzyme inhibition assays to determine IC50 values and selectivity over TCPTP.
- Kinetic analysis to identify the inhibition mechanism.
- Molecular docking and 500 ns molecular dynamics simulations to predict binding mode.
- Umbrella sampling simulations to assess membrane permeability.
Main Results:
- BP-1-102 potently inhibits PTP1B (IC50 values of 5.32 μM and 11.7 μM) with significant selectivity over TCPTP (≥37.7-fold).
- An uncompetitive inhibition mechanism was identified, with binding occurring at a site distal to the active site.
- Molecular simulations revealed a dual-anchor binding mode involving specific protein regions absent in TCPTP.
- Favorable passive membrane permeability was confirmed.
Conclusions:
- BP-1-102 acts as a dual-function inhibitor targeting the PTP1B-JAK2-STAT3 oncogenic axis.
- Its physicochemical properties and mechanism of action support further evaluation in tumors with coactivated PTP1B and STAT3.
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