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An integrated network toxicology and multi-omics study identifies ENO1 as a candidate mediator in
Haixia Liu1, Binru Di1, Xiaoding Men1
1Department of Oncology, The Affiliated Hospital of Southwest Medical University, Luzhou, China.
Abstract:
This study employed an integrative toxicogenomic and multi-omics prioritization approach, combined with preliminary in vitro validation, to identify candidate mediators of benzo [a]pyrene (BaP)-associated gastric cancer progression. A BaP-target-gastric cancer interaction network was constructed by integrating toxicogenomic databases with public transcriptomic datasets. Candidate genes were prioritized using differential expression analysis, network-based screening, LASSO regression, and exploratory artificial neural network modeling. Molecular docking was used to generate an in silico structural hypothesis for possible BaP-ENO1 protein-level interaction, while GO/KEGG enrichment and single-cell RNA sequencing characterized associated biological processes and cellular expression patterns. Integrated analyses prioritized ENO1 as the top BaP-associated candidate in gastric cancer. Single-cell analysis revealed elevated ENO1 expression in gastric cancer epithelial cells and tumor-associated macrophages. In vitro experiments demonstrated that BaP enhanced gastric cancer cell proliferation and migration, effects that were partially attenuated by ENO1 knockdown. Collectively, these findings position ENO1 as a candidate mediator of BaP-associated gastric cancer progression and provide preliminary support for further investigation of the BaP-ENO1 relationship. The study also offers a cross-platform framework for prioritizing candidate targets in environmentally linked cancers.
Insights
Benzo[a]pyrene (BaP) exposure may drive gastric cancer. Researchers identified ENO1 as a key mediator, finding that blocking ENO1 reduced cancer cell growth and migration in preliminary tests.
Area of Science:
- Environmental Health
- Cancer Biology
- Genomics
Background:
- Benzo[a]pyrene (BaP) is an environmental carcinogen linked to various cancers.
- Gastric cancer progression mechanisms, particularly those influenced by environmental factors, require further elucidation.
- Identifying specific molecular mediators is crucial for understanding and potentially intervening in BaP-associated gastric cancer.
Purpose of the Study:
- To identify candidate genes mediating benzo[a]pyrene (BaP)-associated gastric cancer progression.
- To construct and analyze a BaP-target-gastric cancer interaction network.
- To validate candidate mediators using multi-omics and in vitro approaches.
Main Methods:
- Integrative toxicogenomic and multi-omics data analysis.
- Network construction and analysis (differential expression, LASSO regression, artificial neural networks).
- In silico molecular docking, gene ontology (GO)/Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment, single-cell RNA sequencing, and in vitro validation.
Main Results:
- Enolase 1 (ENO1) was prioritized as the top BaP-associated candidate gene in gastric cancer.
- Elevated ENO1 expression was observed in gastric cancer epithelial cells and tumor-associated macrophages.
- In vitro studies showed BaP increased gastric cancer cell proliferation and migration, partially reversed by ENO1 knockdown.
Conclusions:
- Enolase 1 (ENO1) is a potential mediator of benzo[a]pyrene (BaP)-associated gastric cancer progression.
- The findings support further investigation into the BaP-ENO1 relationship in gastric cancer.
- The study presents a framework for prioritizing environmental exposure-linked cancer targets.
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