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Updated: Jul 16, 2026

Monitoring eIF4F Assembly by Measuring eIF4E-eIF4G Interaction in Live Cells
Published on: May 1, 2020
The regulation of protein phosphatase 4 by FBXO42 is required for cancer cell survival
Stephan H Spangenberg1,2, Nicholas Garaffo3,4, Enya Marie Catherine Alcindor1,2
1Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Abstract:
FBXO42 is a poorly characterized F-box protein essential in 15% of cancer cell lines from diverse lineages. High-throughput approaches indicate that FBXO42 function correlates with that of coiled-coil protein CCDC6, and that the two proteins interact physically, but the relationship between them is not understood. We show that FBXO42 ubiquitinates PPP4C (protein phosphatase 4 catalytic subunit) and negatively regulates its expression. FBXO42 binds PPP4C independently of CCDC6. Similarly, we show that CCDC6 physically interacts with PPP4C independently of FBXO42, and identify a PPP4C binding site within CCDC6. However, mutation of CCDC6 does not reduce PPP4C ubiquitination, suggesting that FBXO42 and CCDC6 bind and regulate PPP4C through separate mechanisms. Viability of an FBXO42- and CCDC6-dependent glioblastoma cell line is rescued when PPP4C is knocked down along with FBXO42 or CCDC6, suggesting that aberrant activation of PPP4C is a driver of cell death when FBXO42 or CCDC6 activity is compromised. These findings tie together previous data suggesting that FBXO42 functions with CCDC6 by providing mechanistic insight into their independent regulation of PP4.
Insights
FBXO42 and CCDC6 independently regulate protein phosphatase 4 (PPP4C). Aberrant PPP4C activation drives cell death when FBXO42 or CCDC6 is compromised, revealing their distinct roles in cancer cell viability.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- FBXO42 is an F-box protein crucial for numerous cancer cell lines.
- FBXO42's functional correlation with CCDC6 suggests a shared pathway, but their precise relationship is unclear.
Purpose of the Study:
- To elucidate the functional relationship between FBXO42, CCDC6, and protein phosphatase 4 (PPP4C).
- To understand the distinct mechanisms by which FBXO42 and CCDC6 regulate PPP4C.
Main Methods:
- Co-immunoprecipitation assays to confirm protein interactions.
- Ubiquitination assays to assess FBXO42's effect on PPP4C.
- siRNA-mediated knockdown to evaluate cellular viability.
Main Results:
- FBXO42 directly ubiquitinates and negatively regulates PPP4C.
- FBXO42 and CCDC6 bind to PPP4C independently, indicating separate regulatory mechanisms.
- Knockdown of PPP4C rescues cell viability in FBXO42/CCDC6-dependent glioblastoma cells.
Conclusions:
- FBXO42 and CCDC6 independently regulate PPP4C through distinct mechanisms.
- Aberrant PPP4C activation contributes to cell death when FBXO42 or CCDC6 function is impaired.
- These findings provide mechanistic insight into the FBXO42-CCDC6-PPP4C axis in cancer cell biology.
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