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Familywise Feature Importance Stability in Chemical and Materials Machine Learning
Ruilin Lai1,2, Xiaotong Liu1,2, Yuhang Wang1,2
1College of Computer Science, Beijing Information Science and Technology University, Beijing100101, P. R. China.
Journal of Chemical Information and Modeling
|July 16, 2026
Summary
Feature importance in materials machine learning is often unreliable. This study quantifies ranking robustness across methods, finding high agreement within families but significant variance between them.
Area of Science:
- Materials Science
- Machine Learning
- Computational Chemistry
Background:
- Feature importance analysis in chemical and materials machine learning (ML) is crucial for physical insights.
- However, the robustness of feature importance rankings is rarely quantified.
- This sensitivity arises from variations in predictive models and attribution rules.
Purpose of the Study:
- To quantify the robustness of feature importance rankings across diverse ML pipelines.
- To compare different feature importance analysis families (data-driven, model-based, formula-based).
- To assess the transferability of findings across different material systems.
Main Methods:
- Compared 26 feature importance pipelines on metal-support interaction, high-entropy alloy, and halide perovskite datasets.
- Utilized data-driven, model-based, and formula-based analysis approaches.
- Examined feature importance stability across different material families and modeling assumptions.
Main Results:
- Observed high agreement within feature importance method families but substantial variance between families.
- Identified a small subset of features with stable importance across multiple material families.
- Found that mid-ranked features exhibit high family dependence, shifting importance based on modeling assumptions.
Conclusions:
- Robust interpretability in materials ML requires quantifying feature importance robustness.
- Feature importance should be reported by method family or correlation-based clusters.
- Supplementing importance rankings with resampling intervals enhances reliability.
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