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Updated: Aug 6, 2026

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Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling
Published on: May 21, 2020
Transcriptomic insights into perennial sorghum resistance to sugarcane aphids
Esha Kaler1, Lise Pingault1, Pheonah Nabukalu2
1Department of Entomology, University of Nebraska-Lincoln, Lincoln, NE, USA.
BMC Plant Biology
|July 17, 2026
Summary
Perennial sorghum activates defense mechanisms against sugarcane aphid (SCA) infestation. Resistant sorghum lines show unique gene expression patterns, aiding breeding for enhanced crop resilience.
Area of Science:
- Plant Science
- Agronomy
- Genetics
Background:
- Perennial crops offer sustainable agriculture benefits over annual cereals.
- Sorghum (Sorghum bicolor), a major global cereal, faces threats from the sugarcane aphid (SCA; Melanaphis sacchari).
- Understanding SCA-perennial sorghum interactions is crucial for crop improvement.
Purpose of the Study:
- To explore molecular and genetic mechanisms of SCA resistance in perennial sorghum.
- To identify key genetic factors mediating the interaction between SCA and perennial sorghum (Sorghum bicolor x Sorghum halepense).
Main Methods:
- RNA-sequencing (RNA-seq) was used to analyze transcriptomic responses in perennial sorghum genotypes with varying SCA resistance levels.
- Gene expression profiling was conducted at early (6, 24 h) and late (7 d) time points post-infestation.
- Weighted co-expression network analysis identified key biological and metabolic processes affected by aphid infestation.
Main Results:
- SCA infestation induced distinct gene expression changes related to plant defense mechanisms.
- 10,620 differentially expressed genes were identified across time points.
- SCA-resistant sorghum lines uniquely upregulated genes involved in reactive oxygen species (ROS) production, cell wall modification, callose synthesis, phytohormone signaling, and transcription factors (bHLH, NAC, MYB).
Conclusions:
- SCA-resistant perennial sorghum exhibits enhanced defense signaling activation.
- The study identified novel sources of perennial sorghum resistance to SCA.
- Findings support sorghum breeding programs for improved crop resilience and productivity.
