Related Experiment Video
Updated: Aug 6, 2026

04:18
DNA Electrophoresis Using Thiazole Orange Instead of Ethidium Bromide or Alternative Dyes
Published on: March 31, 2019
Thiazole Orange Fluoresces Freely: No Rigid Environment Required
Kim Greis1, Thomas Toft Lindkvist2, Michael Schreivogel1
1Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, CH-8093Zürich, Switzerland.
The Journal of Physical Chemistry Letters
|July 18, 2026
Summary
Thiazole orange (TO) fluorescence is intrinsic, not requiring a rigid environment. Isolated TO in a vacuum shows strong fluorescence, challenging previous assumptions about its emission mechanism.
Area of Science:
- Photophysics
- Chemical Physics
- Spectroscopy
Background:
- Twist motion is a key relaxation pathway for fluorescent photoswitches.
- Thiazole orange (TO) is typically nonemissive in water but fluoresces strongly when bound to DNA.
Purpose of the Study:
- Investigate the intrinsic fluorescence properties of thiazole orange (TO).
- Determine the environmental factors influencing TO's excited-state dynamics and fluorescence.
- Challenge the assumption that a rigid environment is necessary for TO fluorescence.
Main Methods:
- Cryogenic fluorescence ion spectroscopy of isolated TO cations.
- Quantum-chemical calculations of Franck-Condon spectra and potential energy surfaces.
- Comparative analysis of TO in water, DNA-bound, and gas-phase.
Main Results:
- Isolated TO cations in a vacuum exhibit strong fluorescence with a long 11 ns lifetime.
- Gas-phase TO spectra resemble those of DNA-bound TO, indicating a near-planar geometry.
- An intrinsic barrier on the excited-state potential energy surface prevents deexcitation in the gas phase.
Conclusions:
- Fluorescence is an intrinsic property of TO, not solely dependent on environmental rigidity.
- The excited-state dynamics of TO are governed by an internal barrier to twisting in the absence of environmental constraints.
- This study reframes the understanding of fluorescence mechanisms in photoswitchable dyes.

