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Updated: Aug 6, 2026

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Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography
Published on: January 30, 2016
High-throughput Serial Tomography using an Automated Sample-changing Robot
Shashidhara Marathe1, Malte Storm2, Kaz Wanelik3
1Diamond Light Source Ltd., Harwell Science and Innovation Campus; shashidhara.marathe@diamond.ac.uk.
Journal of Visualized Experiments : Jove
|July 20, 2026
Summary
Automated robotic arms streamline synchrotron X-ray imaging experiments by enabling high-throughput serial tomography and imaging. This innovation significantly boosts data collection efficiency and allows for remote, unattended scanning.
Area of Science:
- Synchrotron X-ray imaging
- Materials science
- High-throughput experimentation
Background:
- Manual sample exchange and alignment are time-consuming in X-ray imaging experiments.
- Current methods limit experimental throughput and efficient use of beamline time.
- Automation is crucial for maximizing data collection efficiency.
Purpose of the Study:
- To describe a workflow for automated data collection using a robotic arm for sample exchange.
- To enhance efficiency and throughput for synchrotron X-ray imaging experiments.
- To enable remote and unattended data collection.
Main Methods:
- Implementation of a robotic arm for sample exchange at the Diamond Light Source (DLS) I13-2 beamline.
- Development of specialized sample holders and trays for robotic handling.
- Integration of automated sample centering and tomography reconstruction pipeline.
Main Results:
- Achieved a 4-10 times increase in experimental throughput compared to manual procedures.
- Enabled fully unattended and remote data collection capabilities.
- Demonstrated the feasibility of high-throughput serial tomography (3D) and imaging (2D).
Conclusions:
- The automated workflow significantly improves data collection efficiency in synchrotron X-ray imaging.
- Robotic sample exchange and automated centering enable unprecedented experimental throughput and remote operation.
- This system offers a unique and innovative solution for advanced materials characterization.
