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Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells
Published on: April 26, 2017
Splicing-mediated control of hnRNPD isoform switching by SRSF2 drives PD-L1-dependent immune evasion in gallbladder
Zhao Cheng1,2, Lin Jiang2, Ming-Yang Wang1,2
1Laboratory of General Surgery and Department of General Surgery, Xinhua Hospital affiliated with Shanghai Jiao Tong University School of Medicine, No. 1665 Kongjiang Road, Shanghai, 200092, China.
Abstract:
Gallbladder cancer (GBC), a lethal malignancy of the biliary tract, is associated with a poor clinical prognosis. Although chemo-immunotherapy combinations demonstrate preliminary efficacy, the molecular determinants of treatment response remain elusive. Emerging evidence implicates aberrant alternative splicing in modulating tumor immunity. Through an in vitro CRISPR/Cas9 screen, we identified SRSF2 as a key RNA-binding protein regulating PD-L1 expression. Intriguingly, SRSF2 does not directly bind PD-L1 mRNA. Multi-omics analyses (mRNA-seq, RIP-seq, and proteomics) revealed that SRSF2 induces exon skipping in hnRNPD, shifting isoform expression from full-length P45 to truncated P40. Functional studies established that P45-but not P40-binds to AU-rich elements in the PD-L1 3'-UTR to promote mRNA degradation. Leveraging this mechanism, we designed splice-switching antisense oligonucleotides (ASOs) that block SRSF2-mediated exon skipping, restoring P45 expression. This intervention effectively reduced PD-L1 levels and potentiated T-cell-mediated cytotoxicity in vitro and in vivo. These findings elucidate a splicing-centric mechanism of immune evasion and highlight the therapeutic potential of splicing modulation in cancer immunotherapy. Proposed model of the SRSF2-hnRNPD-PD-L1 axis in gallbladder cancer (GBC) immune evasion and its therapeutic targeting. Overexpression of SRSF2 drives hnRNPD exon skipping, shifting the isoform balance from the PD-L1-degrading P45 to the truncated P40. This transition stabilizes PD-L1 mRNA and facilitates tumor immune evasion. Conversely, therapeutic intervention with splice-switching ASOs blocks SRSF2-mediated alternative splicing, restores P45 expression, and effectively reactivates T-cell-mediated cytotoxicity against GBC cells.
Insights
Aberrant splicing, driven by SRSF2, promotes gallbladder cancer immune evasion by altering hnRNPD isoforms and stabilizing PD-L1. Targeting this splicing mechanism with ASOs restores anti-tumor immunity.
Area of Science:
- Oncology
- Molecular Biology
- Immunology
Background:
- Gallbladder cancer (GBC) has a poor prognosis, and treatment response determinants are unclear.
- Aberrant alternative splicing is increasingly recognized for its role in modulating tumor immunity.
- Understanding splicing's impact on immune evasion is crucial for developing effective cancer therapies.
Purpose of the Study:
- To identify molecular mechanisms linking alternative splicing to immune evasion in GBC.
- To investigate the role of RNA-binding proteins in regulating PD-L1 expression via splicing.
- To explore splicing modulation as a therapeutic strategy for GBC.
Main Methods:
- In vitro CRISPR/Cas9 screening to identify key RNA-binding proteins.
- Multi-omics analyses including mRNA-seq, RIP-seq, and proteomics.
- Functional studies using splice-switching antisense oligonucleotides (ASOs) in vitro and in vivo.
Main Results:
- SRSF2 was identified as a regulator of PD-L1 expression through alternative splicing of hnRNPD.
- SRSF2 induces hnRNPD exon skipping, favoring the P40 isoform over the P45 isoform.
- The P45 hnRNPD isoform promotes PD-L1 mRNA degradation, while P40 stabilizes it, contributing to immune evasion.
- ASO-mediated inhibition of SRSF2 splicing restored P45 expression, reduced PD-L1, and enhanced anti-tumor T-cell responses.
Conclusions:
- A novel splicing-centric mechanism of immune evasion in GBC involving the SRSF2-hnRNPD-PD-L1 axis was elucidated.
- Therapeutic targeting of alternative splicing by restoring P45 hnRNPD expression can overcome immune evasion.
- Splicing modulation represents a promising strategy to enhance cancer immunotherapy efficacy in GBC.
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