Related Experiment Video
Updated: Aug 6, 2026

Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
Published on: April 13, 2022
Complete Computational Exploration of Eight-Carbon Hydrocarbon Chemical Space
Stephen J Harman1, Kristaps Ermanis1
1School of Chemistry, University of Nottingham, University Park, NottinghamNG7 2RD, United Kingdom.
Abstract:
Hydrocarbons are the most fundamental class of chemical species, but even the chemical space of those with 8 carbon atoms or less has not been explored exhaustively. Here we report a full enumeration and computational exploration of this space. Density functional theory based geometry optimization and energy calculations have identified all stable molecules within this space, forming a new database called CHX8. A universal strain value has been proposed and assigned to each of these molecules, acting as a proxy for synthesizability and providing a clear guideline of how synthetically plausible these molecules could be. This paper explores the limits of the chemical space within CHX8, with a focus on trans-fused, unsaturated, and anti-Bredt ring systems. We show that, contrary to prevailing wisdom, most of these unconventional structures should be synthetically accessible, with relative strain energies less than that of cubane. It is expected that this data set will inspire the synthesis of many new molecules with applications in various areas of chemistry, biology and materials science. The resulting data set also provides a valuable resource for the development of general and robust machine learning models.
Related Concept Videos
Conformations of Ethane and Propane
Staggered conformation is a low energy and more stable conformation with the C-H bonds on the front carbon placed at 60°dihedral angles relative to the C-H bonds on the back carbon, leading to a reduced torsional strain. In staggered ethane, the...
Carbon Skeletons
Cycloalkanes
The IUPAC nomenclature of cycloalkanes follows similar rules that apply to...
Conformations of Cyclohexane
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal tetrahedral value,...
Aromatic Hydrocarbon Anions: Structural Overview
Due to the absence of continuous overlap of p...
Conformations of Butane
