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Updated: Aug 6, 2026

A Technical Guide for Performing Spectroscopic Measurements on Metal-Organic Frameworks
Published on: April 28, 2023
Direct one-pot access to fluorescent benzimidazole-purine nucleosides: selective metal cation/pH sensing and
Samir Kumar Mondal1, Sayan Mukherjee1, Sakshi Singh1
1Department of Chemistry, School of Basic Sciences, Indian Institute of Technology Bhubaneswar Argul Jatni Odisha 752050 India spal@iitbbs.ac.in.
Abstract:
A sustainable one-pot sequential strategy has been developed for the synthesis of novel unprotected benzimidazole-purine nucleosides using K2S2O8 as a green oxidant. This atom- and step-economical protocol proceeds under mild conditions and exhibits broad functional group tolerance. Among the synthesized derivatives, the pyridine-tethered nucleoside 5h displayed notable fluorescence properties with quantum yields of Φ F = 0.6-17.6% and larger stokes shifts (Δv̄ = 8278-12554 cm-1) across solvents of varying polarity. Importantly, probe 5h functions as a highly sensitive and selective "Turn-Off" fluorescent chemosensor for Cu2+ and Fe3+ ions, displaying nanomolar limits of detection 5.49 nM and 3.58 nM respectively, along with distinct pH-responsive behaviour. The pK a values of the conjugate acids of nucleoside 5h were found to be 2.50 and 4.51. Job's plot analysis confirmed a 1 : 1 probe 5h to metal binding stoichiometry, which was further supported by HRMS studies, and frontier molecular orbital (FMO) calculations provided a plausible selective chemosensing mechanism through a strong CHEQ (Chelation-Enhanced Quenching) effect. In addition, the pyrene-tethered nucleoside 5l exhibited dual emission behaviour (λ em (Solution) = 480 nm and λ em (Solid) = 510 nm), attributed to its rigid structural framework. The practical applicability of these fluorescent nucleosides was demonstrated through the accurate detection of Cu2+/Fe3+ ions in real-world water samples and their utilization as encryption ink for forensic science and data security. This work establishes a versatile, environmentally benign, and pioneering approach to the design of novel functional modified nucleosides, with promising applications in fluorescence chemosensing and dual-state emissive materials.
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