Related Experiment Video
Updated: Aug 6, 2026

A Bilingual Computational Workflow for Identifying Potential PLK1 Inhibitors in American Sign Language and English
Published on: April 3, 2026
Selection-based prompting with synthesized candidates unlocks high-performance clinical abbreviation disambiguation
Siwen Wei1, Xiaoyu Liu1, Yonghong Shi1
1Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai 200032, China; Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai 200032, China.
Objective:
Clinical abbreviations introduce semantic ambiguity that hinders automated understanding in healthcare informatics. While generative large language models (LLMs) show promise, direct generation often lacks clinical precision. We present S-ACAD, a task-specific framework that shifts the paradigm from generation to constrained selection using dual-pathway candidate construction to improve clinical abbreviation disambiguation.
Methods:
The S-ACAD pipeline consists of four stages: (i) Anchor generation via preliminary LLM expansion; (ii) Phrase-level retrieval of the top-3 semantic candidates; (iii) Contextual prototyping using pseudo-texts to identify three additional candidates; and (iv) Discriminative selection from the resulting 7-option pool. We evaluated the framework on the original and Adams's denoised CASI datasets using six open-source LLMs.
Results:
S-ACAD demonstrates superior performance, with Gemma-2-9B-IT emerging as the best-performing model, achieving remarkable results on Adams's denoised CASI dataset (accuracy: 0.9228, Macro-F1: 0.9279). Even on the challenging original dataset, it maintains high consistency (accuracy: 0.7585, Macro-F1: 0.7585). Ablation studies confirm that shifting the paradigm from generation to selection via dual-pathway candidate construction is the primary driver of performance, significantly outperforming direct generative baselines.
Conclusion:
S-ACAD reframes clinical abbreviation disambiguation as a constrained selection task for generative LLMs, effectively unlocking the reasoning potential of small models through dual-pathway candidate construction. This offers a high-precision, economical, and privacy-preserving solution for standardizing electronic health records, thereby enhancing their downstream utility in clinical informatics.