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Understanding the Impact of Temperate Bacteriophages on Their Lysogens Through Transcriptomics
Published on: January 5, 2024
Mechanism of Pasteurella multocida Lysis by Virulent Phage vB_PmuP_Pa7: Insights from a Strand-Specific Transcriptome
Hongjian Zhang1, Jinlin Ma2, Wei Zhang3
1College of Agriculture and Animal Husbandry, Qinghai University, Xining 810016, China.
Abstract:
Virulent phage vB_PmuP_Pa7 is a promising candidate for controlling Pasteurella multocida infection, yet the molecular basis of its lytic process remains poorly understood. Here, we performed strand-specific RNA sequencing on P. multocida S34 infected with Pa7 at 0, 20, 30, and 120 min to characterize phage-host transcriptional dynamics. A total of 234, 433, and 558 differentially expressed genes (DEGs) were detected at 20, 30, and 120 min, respectively, indicating progressive host reprogramming during infection. PCA, expression distribution analysis, and sample correlation analysis confirmed clear stage-specific transcriptional shifts. GO and KEGG enrichment analyses indicated that Pa7 infection was associated with changes in translation, ribosome function, ABC transporters, amino sugar and nucleotide sugar metabolism, bacterial chemotaxis, and the TCA cycle. Four representative differentially expressed genes involved in transport, carbohydrate metabolism, and translation-related functions were selected for RT-qPCR analysis. The RT-qPCR results showed partial, gene- and time-point-dependent agreement with the RNA-seq-derived expression patterns. Together, these findings provide a time-resolved transcriptional profile of Pa7 infection and identify host pathways potentially associated with the infection process and bacterial cell lysis. However, the direct functional contributions of these genes and pathways remain to be experimentally determined.
Insights
Virulent phage Pa7 infection alters Pasteurella multocida gene expression, impacting translation, metabolism, and chemotaxis. This study reveals host reprogramming dynamics during phage lysis, offering insights into controlling bacterial infections.
Area of Science:
- Microbiology
- Molecular Biology
- Genomics
Background:
- Virulent phage vB_PmuP_Pa7 shows potential for controlling Pasteurella multocida infections.
- The molecular mechanisms underlying the lytic process of phage Pa7 are not well understood.
Purpose of the Study:
- To characterize the phage-host transcriptional dynamics during Pa7 infection of P. multocida.
- To identify host pathways involved in the phage infection and lysis process.
Main Methods:
- Strand-specific RNA sequencing was performed on P. multocida S34 at multiple time points post-infection with Pa7 (0, 20, 30, and 120 min).
- Differential gene expression analysis, Principal Component Analysis (PCA), and correlation analysis were used to assess transcriptional shifts.
- Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were conducted.
- Reverse transcription quantitative polymerase chain reaction (RT-qPCR) was used to validate the expression patterns of selected genes.
Main Results:
- A progressive increase in differentially expressed genes (DEGs) was observed over time (234 at 20 min, 433 at 30 min, 558 at 120 min), indicating significant host reprogramming.
- Stage-specific transcriptional shifts were confirmed by PCA and expression analysis.
- Pa7 infection significantly altered pathways related to translation, ribosome function, ABC transporters, carbohydrate metabolism, bacterial chemotaxis, and the TCA cycle.
- RT-qPCR results partially corroborated the RNA-seq findings for selected genes.
Conclusions:
- This study provides a time-resolved transcriptional profile of P. multocida during Pa7 infection.
- Key host pathways potentially involved in phage infection and bacterial lysis were identified.
- Further experimental validation is required to determine the direct functional roles of these identified genes and pathways in the phage-host interaction.
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