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In Vivo Light-Sheet Imaging of Senescence Reporter Activity in a Transparent Killifish
Birgit Perner1,2, Christoph Englert1,3
1Molecular Genetics Lab, Leibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Bio-Protocol
|July 28, 2026
Summary
This study introduces a new method for observing cellular senescence in living fish using light-sheet microscopy. This technique allows researchers to track senescence-associated cell cycle arrest in real-time within intact organisms.
Area of Science:
- Aging research
- Cellular biology
- Microscopy techniques
Background:
- Cellular senescence accumulates with age, contributing to tissue dysfunction.
- Current methods for senescence assessment require tissue removal, preventing in vivo longitudinal studies.
- A GFP reporter line in transparent killifish (Nothobranchius furzeri) was previously developed.
Purpose of the Study:
- To describe a protocol for in vivo light-sheet microscopy of senescence-associated cell cycle arrest.
- To enable real-time, single-cell resolution monitoring of senescence in a living vertebrate model.
- To facilitate the study of senescence dynamics in short-lived organisms.
Main Methods:
- Utilized a cdkn1a (p21)-driven GFP reporter line in transparent killifish.
- Developed a protocol for anesthetizing and mounting fish for stable light-sheet microscopy.
- Acquired 3D image stacks and processed data to monitor GFP-positive cells in intact, living fish.
Main Results:
- Successfully monitored GFP-positive cells, indicating senescence-associated cell cycle arrest, in intact living killifish.
- Achieved high-resolution volumetric imaging with minimal phototoxicity.
- Demonstrated the feasibility of analyzing senescence dynamics in a short-lived vertebrate model.
Conclusions:
- The described light-sheet microscopy protocol enables intravital imaging of cellular senescence in living killifish.
- This method offers a non-invasive approach for studying senescence dynamics in vivo.
- While currently terminal, the protocol could be adapted for longitudinal studies with ethical approval.

