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Untargeted Metabolomics from Biological Sources Using Ultraperformance Liquid Chromatography-High Resolution Mass Spectrometry (UPLC-HRMS)
Published on: May 20, 2013
A systematic stepwise optimization framework for rapid multi-analyte UPLC-MS/MS plasma analysis with integrated
Amira E Abd-Elnabi1,2, Amr M Mahmoud3, Dina A El Mously4
1Postgraduate Program in Pharmaceutical Analytical Chemistry, Faculty of Pharmacy, Cairo University, Cairo, 11562, Egypt.
Scientific Reports
|July 28, 2026
Summary
A new six-stage model streamlines bioanalytical method development for multiple analytes using UPLC-MS/MS. This framework enhances reproducibility and ecological sustainability in analytical workflows.
Area of Science:
- Analytical Chemistry
- Bioanalytical Chemistry
- Mass Spectrometry
Background:
- Bioanalytical method development for multiple analytes using Ultra-Performance Liquid Chromatography-tandem Mass Spectrometry (UPLC-MS/MS) faces recurring limitations.
- Current workflows can lack structure, reproducibility, and consideration for environmental impact.
Purpose of the Study:
- To propose a stepwise optimization guidance model for rapid multi-analyte UPLC-MS/MS method development.
- To establish a structured, reproducible, and ecologically sustainable analytical workflow for bioanalysis.
Main Methods:
- A six-stage model encompassing physicochemical profiling, extraction strategy, chromatographic and mobile phase optimization, method validation, and greenness evaluation.
- Demonstration using Rifaximin, Ciprofloxacin, and Fluconazole in human plasma with Ibuprofen as internal standard.
- Environmental applicability assessment using Analytical Greenness Score Assessment (AGSA) and Environmental Protection Performance Index (EPPI).
Main Results:
- Physicochemical profiling informed ionization mode and solubility predictions.
- Liquid-liquid extraction with dichloromethane and rapid isocratic separation (C18 column, methanol/water 95:5 v/v) were successfully implemented.
- Method validation yielded excellent linearity (r² ≥ 0.999).
- Greenness evaluations confirmed environmental applicability.
Conclusions:
- The proposed sequential framework provides a methodological reference for UPLC-MS/MS users.
- It facilitates structured and reproducible bioanalytical workflows.
- The model advances ecological sustainability in multi-analyte UPLC-MS/MS applications.
