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Quantifying Microglia Morphology from Photomicrographs of Immunohistochemistry Prepared Tissue Using ImageJ
Published on: June 5, 2018
Rethinking pathology image analysis through shuffling
Zeyu Liu1, Tianyi Zhang2,3, Brian K Chen3,4
1School of Biological Science and Medical Engineering, Beihang University, Beijing, China.
Summary
Artificial intelligence (AI) struggles with cancer morphology heterogeneity. The PAthoentity Shuffle Strategy (PASS) models biological structures, improving AI
Area of Science:
- Computational pathology
- Artificial intelligence in medicine
- Digital pathology
Background:
- Pathological examination is the gold standard for cancer diagnosis.
- Current AI methods face challenges in capturing multi-scale tumor morphology heterogeneity.
- Accurate analysis requires understanding complex relationships between biological structures.
Purpose of the Study:
- To introduce a novel framework, the PAthoentity Shuffle Strategy (PASS), for pathological image analysis.
- To enhance AI's ability to learn from both local and global morphological features.
- To improve the accuracy and generalizability of AI models in cancer diagnosis.
Main Methods:
- PASS explicitly models pathoentities (cells, glands, tissues) and their hierarchical relationships.
- Controlled shuffling of pathoentities within and across samples enriches relational structure for neural networks.
- Theoretical analysis demonstrates PASS achieves error bounds comparable to state-of-the-art methods.
Main Results:
- PASS demonstrates consistent performance gains across 10 diverse datasets (8 diseases, 9 organs, 4 magnifications).
- The framework shows robust generalization and scalability in various pathological contexts.
- PASS proved effective in a rapid onsite evaluation (ROSE) scenario, indicating clinical potential.
Conclusions:
- Pathoentity shuffling is an effective principle for pathological image analysis.
- PASS bridges biological insight and computational design for enhanced diagnostic modeling.
- This approach improves learning of morphological hierarchy and AI performance in cancer diagnosis.

