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Characterization of Vancomycin Resistance and Associated Genes in Clinical Isolates of Enterococcus Species
Madhumala Shanmugasundaram1, MuthuLakshmi BackiaSubramanian1, Shanthi Mariappan1
1Microbiology, Sri Ramachandra Institute of Higher Education and Research, Chennai, IND.
Abstract:
Introduction Vancomycin is the drug of choice for multidrug-resistant Enterococcal infections. Increased use of vancomycin has resulted in greater minimum inhibitory concentration (MIC) values and resistance. The objective of this study was to detect and characterize vancomycin resistance among clinical Enterococcus isolates using phenotypic susceptibility testing and correlation with molecular analysis of vancomycin resistance genes (vanA, vanB, vanC1, vanC2/3, vanD, vanE, and vanG). Materials and methods A total of 266 clinically significant, consecutive, nonrepetitive Enterococcus specieswere identified from clinical isolates collected from 2023 to 2024 in a tertiary care hospital. Sources of the isolates included urine (98), blood (19), and exudative specimens (149). Using the Kirby-Bauer disc diffusion method, antibiotic susceptibility was tested for various antimicrobial agents, including ampicillin, erythromycin, ciprofloxacin, nitrofurantoin, vancomycin, and linezolid. The agar dilution technique was performed as per Clinical and Laboratory Standards Institute (CLSI) 2025 guidelines to ascertain the MIC for vancomycin. Polymerase chain reaction (PCR) was employed to detect the genes encoding vancomycin resistance, namely, vanA, vanB, vanC1, vanC2/3, vanD, vanE,and vanG. Results Among 266 isolates, vancomycin resistance was detected in 74 isolates with MIC ≥ 32 μg/mL (Enterococcus faecium - 57, Enterococcus faecalis - 9, Enterococcus gallinarum - 7, Enterococcus casseliflavus - 1). All the 74 carried van gene. vanA was detected in 70 and vanC1 in 3 isolates of E. gallinarum. One isolate of E. gallinarum harbored both vanA and vanC1. None of the vancomycin-resistant Enterococcus (VRE) isolates in this study carried vanB, vanC2/3, vanD, vanE, or vanG. Conclusion The increase in VRE has alarmed the global community. More recently, the emergence of linezolid-resistant Enterococci is a cause for concern. Hence, there is an imperative need for in-depth research into the mechanisms behind VRE. In this study, the vanA genotype is more widely distributed in clinical isolates.
Insights
Vancomycin resistance in Enterococcus is increasing, with the vanA gene being the most common cause in clinical isolates. This study highlights the need for further research into vancomycin-resistant Enterococci (VRE) mechanisms.
Area of Science:
- Clinical Microbiology
- Infectious Diseases
- Molecular Epidemiology
Background:
- Vancomycin is a critical antibiotic for treating multidrug-resistant Enterococcal infections.
- Rising vancomycin minimum inhibitory concentration (MIC) values and resistance are significant clinical concerns.
- Characterizing vancomycin resistance mechanisms is essential for effective treatment strategies.
Purpose of the Study:
- To detect and characterize vancomycin resistance in clinical Enterococcus isolates.
- To correlate phenotypic vancomycin resistance with the presence of specific vancomycin resistance genes (vanA, vanB, vanC1, vanC2/3, vanD, vanE, vanG).
- To analyze the prevalence of different vancomycin resistance genotypes in Enterococcus species.
Main Methods:
- Phenotypic susceptibility testing using Kirby-Bauer disc diffusion and agar dilution methods for MIC determination.
- Molecular analysis employing Polymerase Chain Reaction (PCR) to detect vancomycin resistance genes.
- Analysis of 266 consecutive, non-repetitive clinical Enterococcus isolates collected from 2023-2024.
Main Results:
- Vancomycin resistance was detected in 74 out of 266 (27.8%) Enterococcus isolates, with MICs ≥ 32 μg/mL.
- The vanA gene was the most prevalent genotype, found in 70 resistant isolates, primarily in Enterococcus faecium.
- Enterococcus gallinarum isolates showed vanC1 and, in one case, a co-occurrence of vanA and vanC1 genes; no vanB, vanC2/3, vanD, vanE, or vanG genes were detected.
Conclusions:
- The vanA genotype is the predominant mechanism for vancomycin resistance in the studied clinical Enterococcus isolates.
- The increasing prevalence of vancomycin-resistant Enterococci (VRE) necessitates ongoing surveillance and research.
- Emergence of linezolid-resistant Enterococci underscores the urgent need for deeper understanding of VRE resistance mechanisms.
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