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Updated: Aug 5, 2026

Mapping Infant Immunity with Minimal Input: Integrative Single-Cell and Multiomic Profiling
Published on: April 3, 2026
Premature birth and Cesarean section are associated with significant differences in neonatal CD4+ T cell gene
Carlos Jesús Ventura-Martínez1, Linda Aimara Kempis-Calanis1, Sebastian Mijares-Guevara1
1Laboratorio de Inmunología Celular y de Sistemas, Centro de Investigación en Dinámica Celular, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos. Avenida Universidad 1001, Chamilpa, Cuernavaca 62209, México.
Insights
Premature birth and cesarean delivery impact neonatal immunity. Preterm infants
Area of Science:
- Immunology
- Developmental Biology
- Genomics
Background:
- Premature birth and cesarean section are linked to increased infant morbidity and inflammatory conditions.
- The precise effects of gestational age and delivery method on neonatal immune system development are not fully understood.
- CD4+ T cells are crucial for adaptive immune responses and serve as key indicators of immune programming.
Purpose of the Study:
- To investigate how gestational age and mode of delivery influence the early immune programming of CD4+ T cells.
- To analyze the transcriptomic and functional characteristics of CD4+ T cells in preterm and full-term neonates.
Main Methods:
- Collected CD4+ T cells from preterm and full-term neonates (vaginal delivery or cesarean section).
- Performed transcriptomic profiling using mRNA sequencing (mRNA-seq).
- Assessed T cell function, including activation, proliferation, and cytokine production after stimulation.
Main Results:
- Mode of delivery significantly impacts CD4+ T cell transcriptome and function.
- Full-term neonates born via vaginal delivery showed immune activation, higher cytokine production, and reduced proliferation.
- Preterm neonates' CD4+ T cells exhibited enhanced proliferation and increased inflammatory cytokine secretion (IL-13, TNFα, IL-6, IL-17F) upon stimulation.
- Cesarean section was linked to a more restrained CD4+ T cell functional profile.
Conclusions:
- CD4+ T cells from preterm neonates display heightened inflammatory potential, which matures by term.
- Perinatal factors, including gestational age and mode of delivery, play a layered role in shaping neonatal immune trajectories.
- Neonatal immune development is established during fetal life and further modulated by birth events.
Abstract:
Premature birth and cesarean section are associated with increased morbidity and inflammatory diseases. However, their impact on neonatal immunity remains incompletely defined. To explore how gestational age and mode of delivery contribute to early immune programming, we analyzed CD4+ T cells, central regulators of adaptive responses, from preterm neonates and full-term neonates born by cesarean section or vaginal delivery. We performed transcriptomic profiling (mRNA-seq) and functional assessment of T cell activation, proliferation, and cytokine production following stimulation. The mode of delivery emerged as a key factor for CD4+ T cell transcriptome and function. CD4+ T cells from full-term neonates born by vaginal delivery exhibited an immune activation signature, produced higher levels of multiple cytokines, and showed reduced proliferative capacity. In contrast, prematurity was associated with modest changes in basal gene expression relative to full-term cesarean section neonates. CD4+ T cells from preterm neonates displayed enhanced proliferation and increased secretion of inflammatory cytokines (IL-13, TNFα, IL-6, and IL-17F) upon stimulation, consistent with heightened responsiveness. Collectively, our findings show that CD4+ T cells from preterm neonates exhibit augmented inflammatory potential, which becomes more regulated at term. Mode of delivery further contributes to this developmental trajectory: cesarean section is associated with a restrained functional profile, whereas vaginal delivery is associated with a mild immune activation signature and increased responsiveness. These results support a model in which neonatal CD4+ T cell trajectories are established during fetal life and further modulated at birth, highlighting the layered influence of perinatal factors on immune development.
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