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Updated: Aug 5, 2026

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Visualizing Oceanographic Data to Depict Long-term Changes in Phytoplankton
Published on: July 28, 2023
Physics-Informed Transformer for Genus-Level Phytoplankton Forecasting at Drinking-Water Intake Points
Jinuk Lee1, Eunyoung Jung2, Jiye Lee3
1Biological Specimen Conservation Division, Diversity Conservation Research Department, Nakdonggang National Institute of Biological Resources, Sangju, Republic of Korea.
Water Research
|August 1, 2026
Summary
Accurate forecasting of phytoplankton blooms at drinking water intakes is crucial for reservoir management. A new physics-informed Transformer (PITF) framework effectively predicts cell density for Microcystis and Stephanodiscus, ensuring water treatment reliability.
Area of Science:
- Environmental Science
- Water Resource Management
- Machine Learning Applications
Background:
- Phytoplankton blooms at drinking water intakes disrupt filtration and increase operational costs.
- Accurate forecasting is essential for proactive reservoir management and ensuring water quality.
Purpose of the Study:
- To develop and evaluate a physics-informed Transformer (PITF) framework for predicting phytoplankton cell density at drinking water intake points.
- To assess the robustness of the PITF framework under input uncertainty.
- To identify key ecological drivers influencing phytoplankton dynamics.
Main Methods:
- Utilized daily monitoring data from Hoedong Reservoir (2012-2021).
- Developed a physics-informed Transformer (PITF) framework to predict cell density of Microcystis and Stephanodiscus.
- Employed centered rolling-median interpolation for missing data and generated noise-perturbed datasets to test robustness.
- Evaluated model performance using R² and RMSE, and assessed driver importance with SHAP.
Main Results:
- PITF demonstrated strong predictive performance for Microcystis (R²=0.711) and reasonable performance for Stephanodiscus (R²=0.505).
- The framework showed robust forecasting skill even with noise-perturbed input data.
- SHAP analysis identified water temperature and dissolved oxygen as dominant predictors for both phytoplankton genera.
Conclusions:
- The physics-informed Transformer (PITF) framework offers an interpretable and robust approach for forecasting phytoplankton dynamics at intake points.
- This method supports early-warning decision-making for drinking water treatment operations.
- PITF enhances proactive reservoir management by predicting problematic phytoplankton genera.
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