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Published on: December 15, 2017
Evolutionary engineering of synthetic microbial consortia in bioproduction
Diego Ruiz-Sanchis1, Rodrigo Ledesma-Amaro1
1Department of Bioengineering and Imperial College Centre for Engineering Biology, Imperial College London, London SW7 2AZ, UK; Bezos Centre for Sustainable Protein, Imperial College London, London SW7 2AZ, UK; UKRI Engineering Biology Mission Hub on Microbial Food, Imperial College London, London SW7 2AZ, UK.
Adaptive laboratory evolution (ALE) and synthetic microbial consortia enhance bioproduction. Combining these approaches, especially with inter-community selection, offers untapped potential for microbial engineering and metabolic applications.
Area of Science:
- Synthetic biology
- Microbial ecology
- Metabolic engineering
Background:
- Microbial consortia offer metabolic advantages over monocultures for bioproduction.
- Adaptive laboratory evolution (ALE) is a powerful tool for uncovering novel metabolic engineering solutions.
- The synergy between ALE and synthetic microbial consortia in bioproduction is underexplored.
Purpose of the Study:
- To review recent advances at the intersection of ALE and synthetic microbial consortia.
- To focus on bottom-up synthetic consortia and co-cultures.
- To explore the potential of inter-community artificial selection strategies.
Main Methods:
- Review of current literature on ALE and synthetic microbial consortia.
- Analysis of artificial selection at organismal and supra-organismal levels.
- Examination of ecological interactions for community stabilization.
Main Results:
- ALE and synthetic consortia can mutually enhance each other's applicability.
- Artificial selection can shape productive output but may compromise evolvability of costly functions.
- Engineering ecological interactions can stabilize community composition.
Conclusions:
- The combination of ALE and synthetic consortia presents significant opportunities for bioproduction.
- Current approaches often rely on growth-based selection, overlooking other strategies.
- Implementing inter-community artificial selection holds considerable untapped potential for microbial engineering.
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