Related Experiment Video
Updated: Aug 5, 2026

Combined Immunofluorescence and DNA FISH on 3D-preserved Interphase Nuclei to Study Changes in 3D Nuclear Organization
Published on: February 3, 2013
The Bcl11-Cxxc1 axis regulates stage-specific chromatin accessibility during lymphocyte development
Kazuki Okuyama1, Wooseok Seo2, Hirotaka Takahashi3
1Laboratory for Transcriptional Regulation, RIKEN Center for Integrative Medical Sciences (IMS), Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan; kaokuyam@ncc.go.jp ichiro.taniuchi@riken.jp.
Bcl11b protein is vital for T-cell development. Its interaction with Cxxc1 regulates chromatin structure, impacting T-cell maturation and B-cell development.
Area of Science:
- Immunology
- Molecular Biology
- Epigenetics
Background:
- Bcl11b is a zinc finger transcription factor essential for T-lymphopoiesis.
- A truncated Bcl11b disrupts chromatin accessibility in developing T-cells.
Purpose of the Study:
- To identify chromatin modifiers associated with the Bcl11b zinc finger.
- To elucidate the role of Cxxc1 in lymphopoiesis and chromatin regulation.
Main Methods:
- Chromatin immunoprecipitation (ChIP) assays to identify protein binding sites.
- Analysis of thymocyte development in wild-type and knockout mouse models.
- Assessment of chromatin structure and gene expression.
Main Results:
- Cxxc1, a component of the Set1 complex, was identified as a key interacting protein.
- Cxxc1 deficiency impairs the transition from double-negative to double-positive thymocytes, maintaining a double-negative chromatin state.
- Genomic regions bound by Cxxc1 significantly overlap with Bcl11b binding sites and are affected by Bcl11b deficiency.
Conclusions:
- Bcl11b family proteins recruit Cxxc1 to modulate chromatin structure during lymphopoiesis.
- This mechanism is conserved in both T-cell and B-cell development, involving Bcl11a in B-lymphocytes.
Related Concept Videos
Inheritance of Chromatin Structures
Chromatin Position Affects Gene Expression
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the timing and level of...
Lampbrush Chromosomes
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops resemble the...
Chromatin Modification in iPS Cells
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Histone Variants at the Centromere
X-Inactivation

