Related Experiment Video
Updated: Aug 5, 2026

Structure-Guided Design and Development of Novel Cyclophilin A Inhibitors and Ganoderiol-F Derivatives: An In-Silico Approach
Published on: June 23, 2026
Inherent α-Helix Around Tyrosine 183 in the Intrinsically Disordered Tail of the Multi-Site Docking Platform Gab1
Anne Dietrich1, Marc Lewitzky1, Tobias Gruber1
1Tumor Biology Section, Institute of Molecular Medicine, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Intrinsically disordered proteins utilize short linear motifs for function. Researchers structurally characterized a Gab1 protein fragment, revealing a stable alpha-helix around Tyr183, offering insights into protein interactions.
Area of Science:
- * Molecular Biology
- * Structural Biology
- * Biochemistry
Background:
- * Intrinsically disordered proteins (IDPs) play crucial roles in cellular signaling, often mediated by short linear motifs.
- * The Grb2-associated binder 1 (Gab1) protein's C-terminal region is intrinsically disordered and contains phosphorylation sites, but specific structural features remain uncharacterized.
- * Tyrosine residues Tyr162 and Tyr183 in Gab1 have not been structurally studied, despite their potential functional significance.
Purpose of the Study:
- * To structurally characterize a fragment of the Gab1 protein (residues 142-203) using biophysical and computational methods.
- * To investigate the local structural environment of Tyr162 and Tyr183 within the Gab1 C-terminal region.
- * To determine the stability and potential functional implications of any observed structural elements.
Main Methods:
- * Computational prediction of protein structure.
- * Circular dichroism spectroscopy to assess secondary structure.
- * High-resolution Nuclear Magnetic Resonance (NMR) spectroscopy, including chemical shift and relaxation analyses.
Main Results:
- * NMR analysis revealed a stable alpha-helix encompassing residues Pro180 to Ile187, with Tyr183 centrally located within this helix.
- * The majority of the Gab1 fragment, including the region around Tyr162, remained intrinsically disordered.
- * The helical conformation around Tyr183 was found to be stable across various conditions, including pH changes, peptide length variations, and phosphorylation status.
Conclusions:
- * The identified alpha-helix around Tyr183 represents a distinct structural feature within the disordered Gab1 C-terminal tail.
- * This localized helical structure differentiates the microenvironment of Tyr183 from Tyr162.
- * The findings provide a structural basis for future investigations into Gab1's interaction partners and the functional roles of this specific motif.
Related Concept Videos
Tail-anchoring of Proteins in the ER Membrane
Conserved Binding Sites
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Assembly of Signaling Complexes
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Protein Folding
Protein Folding
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Conservation of Protein Domains Over Different Proteins
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to form...
