Related Experiment Video
Updated: Aug 7, 2026

Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates
Published on: February 15, 2016
Crystal structures and supramolecular and Hirshfeld surface analysis of three novel 2,4,6-triaminopyrimidine salts
Marimuthu Mohana1, Marimuthu Sangavi2, Ray J Butcher3
1Department of Chemistry, Periyar Maniammai Institute of Science & Technology (Deemed to be University), Thanjavur 613 403, Tamil Nadu, India.
Abstract:
Three new hydrous molecular salts, namely, 2,4,6-triaminopyrimidin-1-ium anthranilate (2-aminobenzoate) monohydrate, C4H8N5+·C7H6NO2-·H2O (I), 2,4,6-triaminopyrimidin-1-ium 5-aminoisophthalate monohydrate, C4H8N5+·C8H6NO4-·H2O (II), and bis(2,4,6-triaminopyrimidin-1-ium) 4-aminophthalate trihydrate, 2C4H8N5+·C8H5NO42-·3H2O (III), have been synthesized and characterized by single-crystal X-ray diffraction techniques. In all three crystal structures, protonation of the pyrimidine moiety occurs at the N1 position and is reflected in a widening of the C-N-C bond angle. In all three cases, protonation of the triaminopyrimidine (TAP) molecule leads to the formation of the robust charge-assisted R22(8) TAP-carboxylate heterosynthon, which acts as the primary supramolecular building unit. In salt I, TAP base pairing and water-mediated contacts produce tetrameric aggregates and a DDDA (D is donor and A is acceptor) supramolecular array that propagates into a 3D hydrogen-bonded sheet structure. Salt II exhibits a combination of R22(8), R32(8) and R24(8) motifs that fuse to form a continuous hydrogen-bonded chain characterized by a DDDAAA supramolecular array. These chains further assemble into extended sheets which are interconnected by higher-order ring motifs and are reinforced by π-π stacking interactions between the pyrimidine ring and the aromatic anion. The structure of salt III displays the most complex architecture. Multiple hydrogen-bonded arrays, including DADA-type quadruple motifs and large fused-ring motifs, arise through co-operative N-H...O, N-H...N and O-H...O interactions involving the cations, anion and water molecules, resulting in a densely interconnected 3D framework. Hirshfeld surface analysis reveals that H...H contacts dominate the crystal packing, while O...H/H...O and N...H/H...N interactions play a crucial role in directing the supramolecular assembly. The study highlights how anion topology and hydration influence hydrogen-bond hierarchy and supramolecular dimensionality in TAP-based salts.
Related Concept Videos
Structure of Amines
Ionic Crystal Structures
Most monatomic ions behave as charged spheres, and their attraction for ions of opposite charge is the same in every direction. Consequently, stable structures for ionic compounds result (1) when ions of one charge are surrounded by as many ions as possible of the opposite...
Crystal Field Theory - Tetrahedral and Square Planar Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
Chirality at Nitrogen, Phosphorus, and Sulfur
A consequence of chirality is the need for enantiomeric resolution. While this is theoretically possible for all...
Amines to Sulfonamides: The Hinsberg Test
Generally, a primary amine reacts with the Hinsberg reagent to produce an N-substituted benzenesulfonamide. The electron-withdrawing sulfonyl...
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...

