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Predicting Step 2 CK Performance Using Automated Feature Selection and Nested Cross-Validation
Padraig Mark Healy1, Syed Latifi1
1Office of Evaluation, Assessment and Student Informatics, Division of Medical Education, Weill Cornell Medicine - Qatar, Doha, Qatar.
Journal of Medical Education and Curricular Development
|August 7, 2026
Summary
Predicting medical students' United States Medical Licensing Examination-Clinical Knowledge (USMLE-CK) scores is crucial. A new multiple linear regression model effectively predicts USMLE-CK performance using automated feature selection and NBME exam data.
Area of Science:
- Medical Education
- Biostatistics
- Health Informatics
Background:
- The USMLE Step 1 exam's shift to pass/fail necessitates advanced prediction models for the USMLE Step 2 Clinical Knowledge (USMLE-CK) exam.
- Accurate prediction of USMLE-CK performance is vital for evaluating medical student competency.
Purpose of the Study:
- To develop and validate a predictive model for USMLE-CK scores using multiple linear regression and automated feature selection.
- To provide medical educators with a tool to forecast student performance on the USMLE-CK exam.
Main Methods:
- A nested cross-validation framework was employed for feature selection and model validation.
- Data from four undergraduate medical student cohorts (n=117) were analyzed, including internal assessments and National Board Medical Examination (NBME) Clinical Science Subject Exams scores.
- Multiple regression models were evaluated using metrics such as mean CV error, adjusted-R², Mallows' Cp, and Bayesian Information Criteria.
Main Results:
- A four-predictor model was selected, achieving an adjusted-R² of 0.68.
- The optimal model incorporated scores from NBME exams in Medicine, Neurology, Surgery, and performance in a pre-clinical Gastrointestinal unit.
Conclusions:
- The study successfully merged feature selection and model validation to create a streamlined predictive modeling process.
- An interactive dashboard was developed to empower medical educators in predicting USMLE-CK performance.
- This approach shows potential for predicting student performance in other high-stakes assessments.