Related Experiment Video
Updated: Aug 9, 2026

11:19
Isolation of Translating Ribosomes Containing Peptidyl-tRNAs for Functional and Structural Analyses
Published on: February 25, 2011
Ribosomal protein bL27 protects translating ribosomes from tmRNA-SmpB
Divyasorubini Seerpatham1, George Wanes2,3, Chathuri Pathirage4
1Department of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.
Science Advances
|August 7, 2026
Summary
Bacterial ribosomal protein bL27 prevents transfer-messenger RNA (tmRNA) from disrupting protein synthesis. This discovery reveals a crucial role for bL27 in regulating bacterial ribosome rescue mechanisms.
Area of Science:
- Molecular Biology
- Bacterial Genetics
- Biochemistry
Background:
- Bacterial ribosomal protein bL27 is essential but its function in translation is poorly understood.
- The amino terminus of bL27 is near the peptidyl transfer center, a key site for protein synthesis.
Purpose of the Study:
- To elucidate the role of bacterial ribosomal protein bL27 in protein synthesis.
- To investigate the interaction between bL27 and the trans-translation machinery.
Main Methods:
- Genetic manipulation (gene deletion) in bacteria.
- Biochemical assays of in vitro translation.
- Molecular dynamics simulations.
Main Results:
- Deletion of bL27 severely impacts bacterial viability, partially rescued by tmRNA deletion.
- tmRNA-SmpB inhibits protein synthesis on bL27-deficient ribosomes but not wild-type ribosomes.
- Molecular dynamics show bL27 hinders tmRNA movement on the ribosome.
Conclusions:
- Bacterial ribosomal protein bL27 plays a critical role in preventing interference from tmRNA-SmpB during protein synthesis.
- bL27 acts as a gatekeeper, ensuring tmRNA does not sterically hinder tRNA binding and function.
Related Concept Videos
Translational Regulation
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
Bacterial Protein Maturation
Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
Leaky Scanning
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
Ribosome Profiling
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Improving Translational Accuracy
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
Inhibitors of Bacterial Protein Synthesis
Aminoglycosides constitute a highly potent class of bactericidal antibiotics that exert their antimicrobial effects by targeting the bacterial ribosome, specifically disrupting protein synthesis. These polycationic molecules consist of amino-modified sugars linked via glycosidic bonds to an aminocyclitol core such as 2-deoxystreptamine or streptamine. Their strong positive charges facilitate tight binding to the negatively charged phosphate backbone of ribosomal RNA (rRNA), primarily at the 16S...

