Durable clinical and immunologic response to an off-the-shelf EWSR1-FLI1 peptide vaccine in metastatic Ewing sarcoma

Branko Calukovic1,2,3, Katrin Benzler1,2,3, Henning Zelba4

  • 1Department of Internal Medicine VIII - Medical Oncology and Pneumology, University Hospital Tübingen, Tübingen, Germany.

NPJ Precision Oncology
|August 8, 2026
PubMed

Insights

This study shows a new fusion-derived peptide vaccine is safe and effective for metastatic Ewing sarcoma. It generated immune responses and provided long-term disease stability in a patient.

Area of Science:

  • Oncology
  • Immunotherapy
  • Genetics

Background:

  • Ewing sarcoma is a rare, aggressive cancer with poor outcomes, especially when metastatic.
  • Current treatments lack effective immunotherapy options for this fusion-driven malignancy.
  • Fusion breakpoints are potential targets for precision immunotherapy, but their immunogenicity is not well-established.

Purpose of the Study:

  • To evaluate the safety and immunogenicity of a novel multi-peptide vaccine targeting the EWSR1-FLI1 fusion breakpoint in a patient with metastatic Ewing sarcoma.
  • To assess the clinical response and immune system changes following vaccination.

Main Methods:

  • An off-the-shelf multi-peptide vaccine targeting the EWSR1-FLI1 fusion was administered to one patient with high-burden metastatic Ewing sarcoma.
  • Vaccinations were given alongside granulocyte-macrophage colony-stimulating factor (GM-CSF) and topical imiquimod.
  • Immune monitoring involved in vitro peptide stimulation and intracellular cytokine staining to detect T-cell responses.

Main Results:

  • The patient developed de novo polyfunctional CD4+ T-cell responses against all four fusion-derived peptides.
  • These immune responses were first detected at 7 months and persisted for over two years.
  • The treatment was well-tolerated with only mild local reactions, and durable disease stability was maintained for over 26 months.

Conclusions:

  • This first-in-human study demonstrates the feasibility, safety, and immunogenicity of a fusion-derived peptide vaccine in Ewing sarcoma.
  • Precision immunotherapy targeting gene fusions shows promise for treating sarcomas.
  • Further research is warranted to explore this therapeutic approach in fusion-driven sarcomas.

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