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Updated: Aug 11, 2026

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Real-time Imaging of Single Engineered RNA Transcripts in Living Cells Using Ratiometric Bimolecular Beacons
Published on: August 6, 2014
Multicolor Live-Cell mRNA Imaging Using RNA-Regulated Destabilization Domains
Tien G Pham1, Omoyemi Ajayi1, Jiahui Wu2,3,4
1Department of Chemistry, University of Massachusetts Amherst, Amherst, MA, USA.
Methods in Molecular Biology (Clifton, N.J.)
|August 10, 2026
Summary
This study introduces a new method for simultaneously imaging multiple messenger RNAs (mRNAs) in living cells using RNA-regulated destabilization domains. This technique allows for real-time visualization of RNA dynamics and gene expression regulation.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Messenger RNA (mRNA) molecules are essential for protein synthesis and cellular function.
- Real-time imaging of mRNA dynamics provides insights into gene expression regulation.
- Current methods may have limitations in simultaneously visualizing multiple mRNA species.
Purpose of the Study:
- To develop a novel method for simultaneous, real-time imaging of multiple mRNAs in living cells.
- To leverage RNA-regulated destabilization domains for selective mRNA visualization.
- To enable deeper understanding of spatiotemporal RNA dynamics and gene expression.
Main Methods:
- Engineered three distinct mRNA molecules with specific RNA imaging tags.
- Utilized RNA-regulated destabilization domains fused to fluorescent proteins.
- Achieved selective fluorescence activation upon tag-domain binding for mRNA imaging.
Main Results:
- Demonstrated the successful simultaneous imaging of multiple engineered mRNAs in living cells.
- Showcased the specificity of RNA imaging tags binding to their cognate destabilization domains.
- Validated the selective activation of fluorescence correlated with specific mRNA localization and dynamics.
Conclusions:
- The developed method enables simultaneous multicolor imaging of mRNAs in living cells.
- This technique offers a powerful tool for studying RNA biology and gene expression.
- Provides new avenues for investigating RNA localization, transport, and function in real-time.
Keywords:
Fluorescence microscopyFluorogenic proteinsLive-cell RNA imagingMammalian cellsRNA imaging tagsRNA-regulated destabilization domains
