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Updated: Aug 12, 2026

Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique
Published on: January 14, 2016
ATR-dependent phosphorylation of the histone acetyltransferase HBO1 suppresses chromatin binding and promotes
Chunyan Zong1, Jiamin Zhang2, Zhe Zhang3
1Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China; Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology, Shanghai, China; Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai Jiao Tong University, Shanghai, China; Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Abstract:
Mounting evidence has shown that histone acetyltransferase binding to ORC1 (HBO1) serves as an oncoprotein, warranting the use of the small molecule inhibitor WM-3835 for cancer therapy. However, HBO1 is ubiquitously expressed in both tumor and normal tissues, with potential to increase the risk of systemic toxicity. This unmet need highlights the importance of identifying suitable biomarkers to predict the sensitivity to HBO1 inhibitor. Here, we show that ATR, a key regulator of DNA replication stress, is a novel interacting partner of HBO1. In addition, we reveal a regulatory function of HBO1 in DNA replication stress responses, in an ATR-dependent manner. Mechanistically, ATR mediated HBO1 Ser50/53 phosphorylation interferes with the genomic binding of HBO1 and regulates gene expression. Notably, overexpression of HBO1 mutated at the ATR phosphorylation site (S50/53A) dampens the expression of DNA repair related genes and suppresses tumor colony formation, consistent with the observations of WM-3835 treatment. Inhibition of ATR significantly antagonized the sensitivity to WM-3835 treatment. Collectively, our findings uncovered a previously unidentified role of HBO1 in the regulation of replication stress and discovered ATR as a potential biomarker for WM-3835 treatment.
Insights
Histone acetyltransferase binding to ORC1 (HBO1) is an oncoprotein targeted by WM-3835. ATR is a novel HBO1 partner, acting as a biomarker for predicting sensitivity to HBO1 inhibition and reducing toxicity.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Therapeutics
Background:
- Histone acetyltransferase binding to ORC1 (HBO1) is implicated as an oncoprotein.
- HBO1 inhibition via WM-3835 shows therapeutic potential but faces toxicity concerns due to ubiquitous expression.
- Biomarkers are needed to predict patient response and minimize side effects of HBO1 inhibitors.
Purpose of the Study:
- To identify novel interacting partners of HBO1.
- To elucidate the role of HBO1 in DNA replication stress response.
- To discover biomarkers for predicting sensitivity to the HBO1 inhibitor WM-3835.
Main Methods:
- Co-immunoprecipitation to identify HBO1 interacting partners.
- Western blotting and gene expression analysis to study HBO1's role in DNA replication stress.
- Functional assays involving mutated HBO1 and ATR inhibition to assess WM-3835 sensitivity.
Main Results:
- ATR was identified as a novel interacting partner of HBO1.
- HBO1 regulates DNA replication stress in an ATR-dependent manner via phosphorylation at Ser50/53.
- ATR inhibition reduced sensitivity to WM-3835, and mutated HBO1 (S50/53A) mimicked WM-3835 effects.
Conclusions:
- HBO1 plays a critical role in regulating replication stress through ATR.
- ATR is a potential predictive biomarker for WM-3835 therapy.
- Targeting the HBO1-ATR axis may offer a more precise approach to cancer treatment.
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