Related Experiment Video
Updated: Aug 12, 2026

NMR 15N Relaxation Experiments for the Investigation of Picosecond to Nanoseconds Structural Dynamics of Proteins
Published on: November 1, 2024
Revisiting orientational relaxation in bulk water: Observation and mechanistic understanding of an intermediate time
Subhabrata Hazra1, Biman Jana1
1School of Chemical Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India.
Abstract:
The longer time scale of water reorientation is intimately coupled to H-bond exchange, as elucidated by the jump reorientation mechanism proposed by Laage and Hynes. Here, we revisit this mechanism to probe the short-to-intermediate time scales of the reorientation process. Analysis of the reorientation time correlation function (TCF) of bulk water reveals an intermediate time scale of ∼1.15 ps contributing nearly 20% of the total decay. To elucidate its molecular origin, we further analyze the TCF of the donor O*-H* vector over the interval preceding an H-bond exchange event, removing contributions from the transition-state region, which reveals the same ∼1.15 ps component along with a slower ∼6 ps frame-tumbling motion. A wobbling-in-a-cone analysis reveals that this intermediate relaxation time scale originates from an effective coupling between the second wobbling motion and the final orientational randomization process. This regime involves a broader angular exploration of the donor O*-H* bond (∼33°-35°) with an associated relaxation time scale of ∼1.38 ps before randomization. Further trajectory analysis reveals acceptor-free dangling states of the donor between successive successful exchange events, where short-lived states (≤20 fs) arise mainly from angular fluctuations, while longer dangling stretches (≥50 fs) involve increased donor-acceptor distance and populate a near transition-state-like region (∼3.5 Å, ∼30°), although distinct from an exact transition-state configuration. The average waiting time of such long-lived dangling events is ∼1.07 ps. Interestingly, the time scale of the second wobbling motion closely matches the average waiting time of long-lived dangling stretches, indicating unsuccessful hydrogen-bond switching attempts drive intermediate reorientation dynamics. We believe similar analysis will be useful for breaking down time scales observed in various confined systems.
More Related Videos
Related Concept Videos
Atomic Nuclei: Types of Nuclear Relaxation
In spin–lattice or longitudinal relaxation, the excited spins exchange energy with the surrounding lattice as they return to the lower energy level. Among several mechanisms that contribute to spin–lattice relaxation, magnetic dipolar interactions are significant. Here, the excited nucleus transfers energy to a nearby...
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
Atomic Nuclei: Nuclear Relaxation Processes
Fast Reactions
Chemical Shift: Internal References and Solvent Effects
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
IR Spectroscopy: Hooke's Law Approximation of Molecular Vibration
According to Hooke's law, the vibrational frequency is directly proportional to the...

