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Updated: Aug 14, 2026

Detection of Horizontal Gene Transfer Mediated by Natural Conjugative Plasmids in E. coli
Published on: March 24, 2023
Identification of essential genes for conjugative transfer in antimicrobial resistance-associated pELF-type linear
Jun Kurushima1, Natsuko Ota2, Yuka Yoshii1
1Laboratory of Bacterial Drug Resistance, Gunma University Graduate School of Medicine, Showa-machi, Maebashi, Gunma, Japan.
Abstract:
The pELF-type linear plasmid is a critical mobile genetic element responsible for the dissemination of various antimicrobial resistance (AMR) genes, most notably vancomycin resistance in Enterococcus faecium, which is a leading cause of hospital outbreaks worldwide. Despite their crucial role in the expansion of AMR, the molecular mechanisms underlying the conjugative transfer of these linear plasmids remain poorly understood. In this study, the transfer (tra) region of pELF2, a representative vanA-harboring linear plasmid was characterized. Transcriptomic data suggested that the FtsK/VirD4-type adenosine triphosphatase is encoded within a multi-gene operon. By developing a genetic manipulation framework for E. faecium, an extensive mutational analysis of the tra region was performed and the following three essential genes were identified: traCB4 (a putative VirB4 analog), traDD4 (a VirD4-like coupling protein), and traGB6 (a putative VirB6 analog). These genes are indispensable for conjugative transfer. Reporter assays experimentally confirmed the presence of a functional promoter upstream of the identified tra genes. We confirmed that these genes are highly conserved among pELF-type plasmid sequences deposited in public database. The study findings revealed that pELF-type plasmids utilize highly minimized conjugation machinery, which is similar to unusual systems previously identified in other gram-positive bacteria, such as Streptomyces. This study provides the first molecular insights into the transmission of these clinically important linear plasmids in enterococci and lays a foundation for understanding the dissemination of resistance determinants mediated by atypical mobile genetic elements.
Insights
Linear plasmids carrying vancomycin resistance genes spread antimicrobial resistance (AMR). This study identified key genes enabling the transfer of these critical mobile genetic elements in Enterococcus faecium.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- pELF-type linear plasmids are key mobile genetic elements disseminating antimicrobial resistance (AMR) genes, particularly vancomycin resistance in Enterococcus faecium.
- Enterococcus faecium infections are a major cause of hospital outbreaks, and understanding AMR gene spread is crucial.
- The molecular mechanisms of conjugative transfer for these linear plasmids are not well understood.
Purpose of the Study:
- To characterize the transfer (tra) region of the vanA-harboring linear plasmid pELF2.
- To identify essential genes involved in the conjugative transfer of pELF-type plasmids.
- To elucidate the molecular mechanisms of linear plasmid transmission in enterococci.
Main Methods:
- Transcriptomic analysis to identify potential genes in the transfer region.
- Development of a genetic manipulation framework for Enterococcus faecium.
- Extensive mutational analysis of the transfer region and reporter assays.
- Bioinformatic analysis of conserved genes in public databases.
Main Results:
- Identified three essential genes for conjugative transfer: traCB4, traDD4, and traGB6.
- Confirmed a functional promoter upstream of the identified transfer genes.
- Demonstrated that pELF-type plasmids use a minimized conjugation machinery, similar to systems in other Gram-positive bacteria.
- Found these genes to be highly conserved across pELF-type plasmids.
Conclusions:
- The study provides the first molecular insights into the conjugative transfer of clinically significant pELF-type linear plasmids in enterococci.
- Identified key genes (traCB4, traDD4, traGB6) essential for the transmission of vancomycin resistance.
- Highlights the role of minimized conjugation systems in the dissemination of AMR by atypical mobile genetic elements.
Related Concept Videos
Conjugation
Mechanism of Conjugation
Antibiotic Selection
Plasmids
Development of Antibiotic Resistance
Clinical Significance of Antibiotic Resistance

