Transcriptome sequencing and validation of potential biomarkers associated with cognitive impairment after

Yao Tang1, Boyin Yang1, Xingmei Luo2

  • 1Department of General Ward, Affiliated Hospital of Guizhou Medical University, Guiyang, China.

Insights

Researchers identified CXCL8 and FCGR3B as key biomarkers for cognitive impairment following hypertensive cerebral hemorrhage (HCH). These findings offer new insights for managing HCH with cognitive impairment (HCHwCI) and developing targeted therapies.

Area of Science:

  • Neuroscience
  • Genomics
  • Biomarker Discovery

Background:

  • Hypertensive cerebral hemorrhage (HCH) is a leading cause of spontaneous intracerebral hemorrhage (ICH).
  • Cognitive impairment (CI) is a significant long-term disability after ICH, with poorly understood molecular mechanisms.
  • Identifying reliable biomarkers for CI in HCH is crucial for patient management.

Purpose of the Study:

  • To identify and validate biomarkers for cognitive impairment (CI) in patients with hypertensive cerebral hemorrhage (HCH).
  • To elucidate the molecular mechanisms and regulatory networks associated with CI in HCH.
  • To explore potential therapeutic targets for HCH with cognitive impairment (HCHwCI).

Main Methods:

  • Transcriptome sequencing of clinical samples to identify differentially expressed genes.
  • Protein-protein interaction (PPI) network construction and expression level evaluation.
  • Gene set enrichment analysis (GSEA), miRNA/TF regulatory network analysis, drug prediction, and molecular docking.
  • Validation of biomarker expression using reverse transcription-quantitative polymerase chain reaction (RT-qPCR).

Main Results:

  • CXCL8 and FCGR3B were identified as significantly upregulated biomarkers in HCH patients with CI, validated by RT-qPCR.
  • These biomarkers are enriched in oxidative phosphorylation and related pathways.
  • Regulatory networks involving 67 miRNAs and 29 transcription factors (TFs) were predicted for CXCL8 and FCGR3B.
  • Computational docking suggested potential therapeutic drugs, including clozapine and a compound identified as 6401-97-4, with good binding activity.

Conclusions:

  • CXCL8 and FCGR3B are promising biomarkers for cognitive impairment in hypertensive cerebral hemorrhage (HCH).
  • These findings provide a foundation for understanding the molecular basis of HCH with cognitive impairment (HCHwCI).
  • The identified biomarkers and regulatory networks offer potential avenues for future therapeutic strategies.
Abstract

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