Fragment-Based Discovery of Potent RNA-Competitive Inhibitors of the DEAH-Box RNA Helicase DHX8

Benjamin J Read1, Caroline Ewens1, Federica Gigante1

  • 1Centre for Cancer Drug Discovery, Division of Cancer Therapeutics, The Institute of Cancer Research, LondonSM2 5GP, U.K.

Insights

Researchers discovered new DHX8 inhibitors targeting cancer. These novel compounds show nanomolar potency and cellular activity, offering a promising therapeutic strategy for oncology by blocking RNA helicase function.

Area of Science:

  • Molecular Biology
  • Biochemistry
  • Structural Biology

Background:

  • Human DHX8 is a spliceosomal RNA helicase critical for mRNA release and splicing fidelity.
  • DHX8 is a potential oncology target due to its role in stress-adaptive gene expression and oncogenic stress responses.

Purpose of the Study:

  • To discover and optimize novel RNA-competitive inhibitors of DHX8.
  • To elucidate the structure-activity relationships for DHX8 inhibition.

Main Methods:

  • Structure-guided design based on biophysical fragment screening.
  • Biochemical assays to determine inhibitor potency (nanomolar range).
  • Cellular target engagement assays and in vitro pharmacokinetic studies.

Main Results:

  • Identification of a novel 2-(phenethylthio)nicotinic acid scaffold for DHX8 inhibition.
  • Compound 53 demonstrated nanomolar biochemical potency and cellular activity.
  • Optimization involved targeting specific binding interactions within DHX8, including the Winged-Helix domain.

Conclusions:

  • Novel DHX8 inhibitors were developed with potential as cancer therapeutics.
  • Inhibitor binding to the Winged-Helix domain stabilizes an inactive conformation, blocking RNA translocation.
  • These findings provide a foundation for further development of DHX8-targeted cancer therapies.

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